miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10567 3' -53.8 NC_002687.1 + 212009 0.66 0.997076
Target:  5'- aGCUAUcgaCGGUGUCcgAGAUugGGCUUGCGGu -3'
miRNA:   3'- -CGGUG---GCCAUAG--UUUG--UCGAGCGCCc -5'
10567 3' -53.8 NC_002687.1 + 87422 0.66 0.996592
Target:  5'- aGCCcggcuaccagauGCCGGUG-CAAcCGGUgcaaGCGGGg -3'
miRNA:   3'- -CGG------------UGGCCAUaGUUuGUCGag--CGCCC- -5'
10567 3' -53.8 NC_002687.1 + 308845 0.66 0.996592
Target:  5'- uGCCACCGGaggccUCccGCuGCUCggugGUGGGg -3'
miRNA:   3'- -CGGUGGCCau---AGuuUGuCGAG----CGCCC- -5'
10567 3' -53.8 NC_002687.1 + 226529 0.66 0.996592
Target:  5'- cGCCGCUGGgacugcuGGACGGCUgggacCGCuGGGa -3'
miRNA:   3'- -CGGUGGCCauag---UUUGUCGA-----GCG-CCC- -5'
10567 3' -53.8 NC_002687.1 + 235431 0.66 0.996592
Target:  5'- cGCCACUGa----GAGCaAGCUCGUGGa -3'
miRNA:   3'- -CGGUGGCcauagUUUG-UCGAGCGCCc -5'
10567 3' -53.8 NC_002687.1 + 41314 0.66 0.996592
Target:  5'- cGCCAgagCGGcGUCGGACGaaUUGCGGGc -3'
miRNA:   3'- -CGGUg--GCCaUAGUUUGUcgAGCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 154230 0.66 0.996045
Target:  5'- aGCCACCGGaUGUUcucguucgaAAACAGUgcaUCGaacaCGGGu -3'
miRNA:   3'- -CGGUGGCC-AUAG---------UUUGUCG---AGC----GCCC- -5'
10567 3' -53.8 NC_002687.1 + 302466 0.66 0.995428
Target:  5'- gGCCGCUGGgaAUUcgGCGGCUcacaCGCuGGGu -3'
miRNA:   3'- -CGGUGGCCa-UAGuuUGUCGA----GCG-CCC- -5'
10567 3' -53.8 NC_002687.1 + 139999 0.66 0.995428
Target:  5'- --aACCuGGUcgUGAGCAGUUCGUGGa -3'
miRNA:   3'- cggUGG-CCAuaGUUUGUCGAGCGCCc -5'
10567 3' -53.8 NC_002687.1 + 317498 0.66 0.99516
Target:  5'- cGCCugcuUCGGUGUCAAucucaaucucuguCAGUUCGCuuccGGGc -3'
miRNA:   3'- -CGGu---GGCCAUAGUUu------------GUCGAGCG----CCC- -5'
10567 3' -53.8 NC_002687.1 + 303840 0.66 0.994734
Target:  5'- gGCCACCGau----GACAGCa-GCGGGc -3'
miRNA:   3'- -CGGUGGCcauaguUUGUCGagCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 172283 0.66 0.994734
Target:  5'- -aCugCGGUGggGAACGGUggggGCGGGg -3'
miRNA:   3'- cgGugGCCAUagUUUGUCGag--CGCCC- -5'
10567 3' -53.8 NC_002687.1 + 315401 0.66 0.994734
Target:  5'- --gACUGGUAUCAAGugcggcuaaAGCUCGUGGu -3'
miRNA:   3'- cggUGGCCAUAGUUUg--------UCGAGCGCCc -5'
10567 3' -53.8 NC_002687.1 + 279337 0.66 0.994734
Target:  5'- uGCCGCUGGUGg-GAGCA--UCGCuGGGu -3'
miRNA:   3'- -CGGUGGCCAUagUUUGUcgAGCG-CCC- -5'
10567 3' -53.8 NC_002687.1 + 280928 0.67 0.993958
Target:  5'- uGCCggggGCCcGUGUUgAAGCAGCgUCGgCGGGg -3'
miRNA:   3'- -CGG----UGGcCAUAG-UUUGUCG-AGC-GCCC- -5'
10567 3' -53.8 NC_002687.1 + 96958 0.67 0.993876
Target:  5'- -aCACgCGGaAUCAAauccggcGCAGCggUGCGGGg -3'
miRNA:   3'- cgGUG-GCCaUAGUU-------UGUCGa-GCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 109137 0.67 0.993092
Target:  5'- uGCCAUCGGUGcucUCGGugGuGCUCuCGGu -3'
miRNA:   3'- -CGGUGGCCAU---AGUUugU-CGAGcGCCc -5'
10567 3' -53.8 NC_002687.1 + 126190 0.67 0.993092
Target:  5'- cGCCACCGGUcgCG-ACAGaCgccCGCGc- -3'
miRNA:   3'- -CGGUGGCCAuaGUuUGUC-Ga--GCGCcc -5'
10567 3' -53.8 NC_002687.1 + 29875 0.67 0.99213
Target:  5'- cGCUGUCGGaaggCGAGCAGUUUGCGGa -3'
miRNA:   3'- -CGGUGGCCaua-GUUUGUCGAGCGCCc -5'
10567 3' -53.8 NC_002687.1 + 41650 0.67 0.99213
Target:  5'- aGCCGuuGGcUGUCGAGCAGUUCcucuGCGc- -3'
miRNA:   3'- -CGGUggCC-AUAGUUUGUCGAG----CGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.