miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10567 3' -53.8 NC_002687.1 + 225861 0.67 0.991821
Target:  5'- gGCgGCCGGgacgaggagacggcUAcgCAGGCAGCUggagccggUGCGGGg -3'
miRNA:   3'- -CGgUGGCC--------------AUa-GUUUGUCGA--------GCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 226047 0.67 0.991821
Target:  5'- gGCgGCCGGgacgaggagacggcUAcgCAGGCAGCUggagccggUGCGGGg -3'
miRNA:   3'- -CGgUGGCC--------------AUa-GUUUGUCGA--------GCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 310785 0.67 0.989888
Target:  5'- uGCUACgCGGUGcUGGACAGU--GCGGGa -3'
miRNA:   3'- -CGGUG-GCCAUaGUUUGUCGagCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 295430 0.67 0.989764
Target:  5'- aUCugCGGUcuGauagacgucgaccUCGAGgAGCUCGUGGGa -3'
miRNA:   3'- cGGugGCCA--U-------------AGUUUgUCGAGCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 180402 0.68 0.988594
Target:  5'- uCCGaCGGUGUCAGAUguAGC-CGCGGc -3'
miRNA:   3'- cGGUgGCCAUAGUUUG--UCGaGCGCCc -5'
10567 3' -53.8 NC_002687.1 + 134622 0.68 0.988594
Target:  5'- cCCAUCGGaAUU-AGCcGCUCGCGGa -3'
miRNA:   3'- cGGUGGCCaUAGuUUGuCGAGCGCCc -5'
10567 3' -53.8 NC_002687.1 + 85781 0.68 0.985623
Target:  5'- uGCCAagGGU-UCAGACGGCUCGaCuGGu -3'
miRNA:   3'- -CGGUggCCAuAGUUUGUCGAGC-GcCC- -5'
10567 3' -53.8 NC_002687.1 + 321526 0.68 0.982095
Target:  5'- uGCCGCaaGUcgCAAACAG-UCGcCGGGa -3'
miRNA:   3'- -CGGUGgcCAuaGUUUGUCgAGC-GCCC- -5'
10567 3' -53.8 NC_002687.1 + 146448 0.68 0.980104
Target:  5'- cGCCGCCaauagGGUAUC-GugGGgUCGCGaGGc -3'
miRNA:   3'- -CGGUGG-----CCAUAGuUugUCgAGCGC-CC- -5'
10567 3' -53.8 NC_002687.1 + 306202 0.69 0.977952
Target:  5'- uGCCACaGG---CAAGCAGCUgGaCGGGa -3'
miRNA:   3'- -CGGUGgCCauaGUUUGUCGAgC-GCCC- -5'
10567 3' -53.8 NC_002687.1 + 262778 0.69 0.975634
Target:  5'- aCCACCGaaAUC-GACuGCUCGgGGGa -3'
miRNA:   3'- cGGUGGCcaUAGuUUGuCGAGCgCCC- -5'
10567 3' -53.8 NC_002687.1 + 215330 0.69 0.974905
Target:  5'- cCCGCCGGUGUCGAACGacugguccgucuccGCcgaUCGgcaGGGa -3'
miRNA:   3'- cGGUGGCCAUAGUUUGU--------------CG---AGCg--CCC- -5'
10567 3' -53.8 NC_002687.1 + 226233 0.69 0.973142
Target:  5'- gGCgGCCGGgacgaaCAGACGGCUaCGCaGGc -3'
miRNA:   3'- -CGgUGGCCaua---GUUUGUCGA-GCGcCC- -5'
10567 3' -53.8 NC_002687.1 + 170729 0.69 0.970471
Target:  5'- uGCC-CCGGU-UCGugcccCGGUUCGUGGGc -3'
miRNA:   3'- -CGGuGGCCAuAGUuu---GUCGAGCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 279406 0.69 0.967318
Target:  5'- gGCCGCUGGUGUCAccagugaAGCAGU---UGGGa -3'
miRNA:   3'- -CGGUGGCCAUAGU-------UUGUCGagcGCCC- -5'
10567 3' -53.8 NC_002687.1 + 225675 0.7 0.961326
Target:  5'- gGCgGCCGGgacgAacagacggcuacUCAGGCAGCUggagccggUGCGGGg -3'
miRNA:   3'- -CGgUGGCCa---U------------AGUUUGUCGA--------GCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 39424 0.7 0.954238
Target:  5'- cGCCAUgcu--UC-AGCAGCUCGCGGGc -3'
miRNA:   3'- -CGGUGgccauAGuUUGUCGAGCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 286292 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5'
10567 3' -53.8 NC_002687.1 + 289426 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5'
10567 3' -53.8 NC_002687.1 + 289042 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.