miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10567 3' -53.8 NC_002687.1 + 295014 1.12 0.007593
Target:  5'- gGCCACCGGUAUCAAACAGCUCGCGGGu -3'
miRNA:   3'- -CGGUGGCCAUAGUUUGUCGAGCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 321526 0.68 0.982095
Target:  5'- uGCCGCaaGUcgCAAACAG-UCGcCGGGa -3'
miRNA:   3'- -CGGUGgcCAuaGUUUGUCgAGC-GCCC- -5'
10567 3' -53.8 NC_002687.1 + 180402 0.68 0.988594
Target:  5'- uCCGaCGGUGUCAGAUguAGC-CGCGGc -3'
miRNA:   3'- cGGUgGCCAUAGUUUG--UCGaGCGCCc -5'
10567 3' -53.8 NC_002687.1 + 87422 0.66 0.996592
Target:  5'- aGCCcggcuaccagauGCCGGUG-CAAcCGGUgcaaGCGGGg -3'
miRNA:   3'- -CGG------------UGGCCAUaGUUuGUCGag--CGCCC- -5'
10567 3' -53.8 NC_002687.1 + 277147 0.73 0.86687
Target:  5'- gGCCGCCGacg--AGGCAGCgCGCGGGg -3'
miRNA:   3'- -CGGUGGCcauagUUUGUCGaGCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 32956 0.72 0.896318
Target:  5'- cUCGCCGGaGUCAAACGGcCuguucaaccccucgaUCGCGGGc -3'
miRNA:   3'- cGGUGGCCaUAGUUUGUC-G---------------AGCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 286292 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5'
10567 3' -53.8 NC_002687.1 + 287067 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5'
10567 3' -53.8 NC_002687.1 + 288914 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5'
10567 3' -53.8 NC_002687.1 + 146448 0.68 0.980104
Target:  5'- cGCCGCCaauagGGUAUC-GugGGgUCGCGaGGc -3'
miRNA:   3'- -CGGUGG-----CCAUAGuUugUCgAGCGC-CC- -5'
10567 3' -53.8 NC_002687.1 + 289426 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5'
10567 3' -53.8 NC_002687.1 + 288658 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5'
10567 3' -53.8 NC_002687.1 + 283533 0.73 0.852231
Target:  5'- gGCUACCGGaGUCAcgaGGgGGCUCGCGa- -3'
miRNA:   3'- -CGGUGGCCaUAGU---UUgUCGAGCGCcc -5'
10567 3' -53.8 NC_002687.1 + 225675 0.7 0.961326
Target:  5'- gGCgGCCGGgacgAacagacggcuacUCAGGCAGCUggagccggUGCGGGg -3'
miRNA:   3'- -CGgUGGCCa---U------------AGUUUGUCGA--------GCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 85373 0.73 0.859644
Target:  5'- uGCCACCGGccUUucGCAGaC-CGCGGGg -3'
miRNA:   3'- -CGGUGGCCauAGuuUGUC-GaGCGCCC- -5'
10567 3' -53.8 NC_002687.1 + 287709 0.71 0.937551
Target:  5'- cCCACCGuGUGUgAAGCuGCUCGCuugucaaggcauGGGc -3'
miRNA:   3'- cGGUGGC-CAUAgUUUGuCGAGCG------------CCC- -5'
10567 3' -53.8 NC_002687.1 + 226233 0.69 0.973142
Target:  5'- gGCgGCCGGgacgaaCAGACGGCUaCGCaGGc -3'
miRNA:   3'- -CGgUGGCCaua---GUUUGUCGA-GCGcCC- -5'
10567 3' -53.8 NC_002687.1 + 85781 0.68 0.985623
Target:  5'- uGCCAagGGU-UCAGACGGCUCGaCuGGu -3'
miRNA:   3'- -CGGUggCCAuAGUUUGUCGAGC-GcCC- -5'
10567 3' -53.8 NC_002687.1 + 227221 0.73 0.859644
Target:  5'- cGCaCACCGGcagGUCGGACGGUagcCGCGGa -3'
miRNA:   3'- -CG-GUGGCCa--UAGUUUGUCGa--GCGCCc -5'
10567 3' -53.8 NC_002687.1 + 304402 0.71 0.927411
Target:  5'- uCCAUCGGUGUCuu-CAGCuccuuugUCGCGGu -3'
miRNA:   3'- cGGUGGCCAUAGuuuGUCG-------AGCGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.