miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10567 5' -58.2 NC_002687.1 + 78261 0.66 0.945903
Target:  5'- cUUCCCAUucGcCUCCUcCGAGGUgGAgGg -3'
miRNA:   3'- -AAGGGUGcuC-GAGGA-GCUCCAgCUgC- -5'
10567 5' -58.2 NC_002687.1 + 85345 0.66 0.941694
Target:  5'- gUCCCGCGGG-UCC-CGucGGUcCGGCGg -3'
miRNA:   3'- aAGGGUGCUCgAGGaGCu-CCA-GCUGC- -5'
10567 5' -58.2 NC_002687.1 + 318846 0.68 0.900528
Target:  5'- -cCUCACGAGCUUCuuUCGAGG-CG-CGg -3'
miRNA:   3'- aaGGGUGCUCGAGG--AGCUCCaGCuGC- -5'
10567 5' -58.2 NC_002687.1 + 85904 0.68 0.881702
Target:  5'- gUCCCuCG-GCUCCUgGAGGgccaCGugGu -3'
miRNA:   3'- aAGGGuGCuCGAGGAgCUCCa---GCugC- -5'
10567 5' -58.2 NC_002687.1 + 121516 0.68 0.875034
Target:  5'- aUUCCCGgGuaCUUgUUGAGGUCGACGa -3'
miRNA:   3'- -AAGGGUgCucGAGgAGCUCCAGCUGC- -5'
10567 5' -58.2 NC_002687.1 + 235402 0.68 0.875034
Target:  5'- -gCCCGCGAacaaaUCCagGAGGUCGAUGc -3'
miRNA:   3'- aaGGGUGCUcg---AGGagCUCCAGCUGC- -5'
10567 5' -58.2 NC_002687.1 + 107079 0.69 0.823309
Target:  5'- aUCUCAgGAGCUgUCUCGAGGU-GAUGa -3'
miRNA:   3'- aAGGGUgCUCGA-GGAGCUCCAgCUGC- -5'
10567 5' -58.2 NC_002687.1 + 74919 0.71 0.727972
Target:  5'- --aCU-CGAGCaCCUCGAGGUCGGCa -3'
miRNA:   3'- aagGGuGCUCGaGGAGCUCCAGCUGc -5'
10567 5' -58.2 NC_002687.1 + 252430 0.71 0.718721
Target:  5'- gUUCCUGCGAGCa---CGAGGUCGGCa -3'
miRNA:   3'- -AAGGGUGCUCGaggaGCUCCAGCUGc -5'
10567 5' -58.2 NC_002687.1 + 125289 0.73 0.662111
Target:  5'- -cUCUugGAGCUUagCUCGAGGUgCGGCGg -3'
miRNA:   3'- aaGGGugCUCGAG--GAGCUCCA-GCUGC- -5'
10567 5' -58.2 NC_002687.1 + 260779 0.74 0.604726
Target:  5'- gUCCCagaACGAGCUUC-CGuGGUCGGCa -3'
miRNA:   3'- aAGGG---UGCUCGAGGaGCuCCAGCUGc -5'
10567 5' -58.2 NC_002687.1 + 295052 1.06 0.006939
Target:  5'- aUUCCCACGAGCUCCUCGAGGUCGACGu -3'
miRNA:   3'- -AAGGGUGCUCGAGGAGCUCCAGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.