miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10568 3' -57.9 NC_002687.1 + 282421 0.66 0.948447
Target:  5'- cGCuGCugCCacuaCGGCcccugCCGCCGCUGAGg -3'
miRNA:   3'- -CGuUGugGGa---GUCGa----GGCGGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 328106 0.66 0.948447
Target:  5'- aGCGGCGaCgaCGGCUUCGCCAUgGAAu -3'
miRNA:   3'- -CGUUGUgGgaGUCGAGGCGGUGgCUU- -5'
10568 3' -57.9 NC_002687.1 + 156767 0.66 0.948447
Target:  5'- aCAAUugUCUgCAGCUUCGCCGCguaGAGu -3'
miRNA:   3'- cGUUGugGGA-GUCGAGGCGGUGg--CUU- -5'
10568 3' -57.9 NC_002687.1 + 230209 0.66 0.944308
Target:  5'- cCAGCACgCCUCAGCg-UGCUACCu-- -3'
miRNA:   3'- cGUUGUG-GGAGUCGagGCGGUGGcuu -5'
10568 3' -57.9 NC_002687.1 + 262810 0.66 0.944308
Target:  5'- gGCGAUGCCCUUcGUcacCUGCCGCCGc- -3'
miRNA:   3'- -CGUUGUGGGAGuCGa--GGCGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 304109 0.66 0.944308
Target:  5'- aGUGugACCguaUCGGgUCCGgCACCGAGu -3'
miRNA:   3'- -CGUugUGGg--AGUCgAGGCgGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 3212 0.66 0.944308
Target:  5'- uCGGCGCCCUCgAGa-CCGCCGCauaCGAGa -3'
miRNA:   3'- cGUUGUGGGAG-UCgaGGCGGUG---GCUU- -5'
10568 3' -57.9 NC_002687.1 + 170951 0.66 0.939957
Target:  5'- cCGGCGCCUUCuaucCUCCGaaGCCGAAg -3'
miRNA:   3'- cGUUGUGGGAGuc--GAGGCggUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 263270 0.66 0.939957
Target:  5'- uCGACGCCCgacaUCAGC-CCGUCACaaaaGAu -3'
miRNA:   3'- cGUUGUGGG----AGUCGaGGCGGUGg---CUu -5'
10568 3' -57.9 NC_002687.1 + 118491 0.66 0.939957
Target:  5'- cCAACGCCCU-AGC-CCGuUCACUGAAc -3'
miRNA:   3'- cGUUGUGGGAgUCGaGGC-GGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 243317 0.66 0.935393
Target:  5'- cGCuGCACCCgcuucgaccgAGUUCCGCaaCGCCGAGg -3'
miRNA:   3'- -CGuUGUGGGag--------UCGAGGCG--GUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 227200 0.66 0.935393
Target:  5'- cGCcucCACCaUCAucguucaccGCUCCGCCACCGc- -3'
miRNA:   3'- -CGuu-GUGGgAGU---------CGAGGCGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 126171 0.66 0.930614
Target:  5'- cGUGAUGCaCUUCuGCccCCGCCACCGGu -3'
miRNA:   3'- -CGUUGUG-GGAGuCGa-GGCGGUGGCUu -5'
10568 3' -57.9 NC_002687.1 + 166919 0.66 0.930614
Target:  5'- aCAACAgCUUCAGCUgCUGUaCGCCGGGa -3'
miRNA:   3'- cGUUGUgGGAGUCGA-GGCG-GUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 331379 0.67 0.92562
Target:  5'- aGUAGCugUCUCuGCUCCGC--CCGGu -3'
miRNA:   3'- -CGUUGugGGAGuCGAGGCGguGGCUu -5'
10568 3' -57.9 NC_002687.1 + 76200 0.67 0.92562
Target:  5'- cGCAA-GCgCUUCAGCUCCGCUACa--- -3'
miRNA:   3'- -CGUUgUG-GGAGUCGAGGCGGUGgcuu -5'
10568 3' -57.9 NC_002687.1 + 277383 0.67 0.92562
Target:  5'- uGCAACcauuGCCCgcgCuGCUaCUGCUGCCGAGc -3'
miRNA:   3'- -CGUUG----UGGGa--GuCGA-GGCGGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 85427 0.67 0.92562
Target:  5'- uCAGgGCCCUCAgGgUCCuaagggGCCGCCGGGu -3'
miRNA:   3'- cGUUgUGGGAGU-CgAGG------CGGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 331891 0.67 0.920412
Target:  5'- cGCAaucgccuccACGCCCa-AGCgCCGCCGCCGc- -3'
miRNA:   3'- -CGU---------UGUGGGagUCGaGGCGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 308234 0.67 0.920412
Target:  5'- -gGACGCCgUCAGCUaaaGUgACCGAGg -3'
miRNA:   3'- cgUUGUGGgAGUCGAgg-CGgUGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.