miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10568 3' -57.9 NC_002687.1 + 299630 0.67 0.914988
Target:  5'- ----gACCCUCGucGC-CCGCCGCUGGAc -3'
miRNA:   3'- cguugUGGGAGU--CGaGGCGGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 40555 0.67 0.914988
Target:  5'- cGCAACAcuCCCUCA--UCCGUCACUGc- -3'
miRNA:   3'- -CGUUGU--GGGAGUcgAGGCGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 71826 0.67 0.914988
Target:  5'- aGCGAUGCCUuuuUCGGCaUCCGCCggGCCu-- -3'
miRNA:   3'- -CGUUGUGGG---AGUCG-AGGCGG--UGGcuu -5'
10568 3' -57.9 NC_002687.1 + 282303 0.67 0.909351
Target:  5'- gGCAcCGCCC-CuGCUCCuGCCgcgACCGAu -3'
miRNA:   3'- -CGUuGUGGGaGuCGAGG-CGG---UGGCUu -5'
10568 3' -57.9 NC_002687.1 + 206212 0.68 0.884701
Target:  5'- --uACGCaCCUCAGC-CUGCaCACCGGu -3'
miRNA:   3'- cguUGUG-GGAGUCGaGGCG-GUGGCUu -5'
10568 3' -57.9 NC_002687.1 + 142831 0.68 0.884701
Target:  5'- aGCAuaGCAUCCUCcaucagAGCUCuUGCC-CCGAAa -3'
miRNA:   3'- -CGU--UGUGGGAG------UCGAG-GCGGuGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 332160 0.68 0.878027
Target:  5'- cGCGACACU---GGCUCCGUCGCUGu- -3'
miRNA:   3'- -CGUUGUGGgagUCGAGGCGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 329127 0.68 0.871156
Target:  5'- cCAGCugCUUCGccgauGCUCUugGCCACCGAu -3'
miRNA:   3'- cGUUGugGGAGU-----CGAGG--CGGUGGCUu -5'
10568 3' -57.9 NC_002687.1 + 75056 0.69 0.849405
Target:  5'- aUAGC-UCCUCgGGCUCCuCCGCCGAAa -3'
miRNA:   3'- cGUUGuGGGAG-UCGAGGcGGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 224504 0.69 0.849405
Target:  5'- cCAGCGCCagcgcCAGCgccaCCGCCACCGc- -3'
miRNA:   3'- cGUUGUGGga---GUCGa---GGCGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 8639 0.69 0.834008
Target:  5'- aGCAGCAUCCgaCAGCUgCGCCAuaGGu -3'
miRNA:   3'- -CGUUGUGGGa-GUCGAgGCGGUggCUu -5'
10568 3' -57.9 NC_002687.1 + 332721 0.69 0.834008
Target:  5'- aCAGCAUCCUCgcccacaaGGaCUCCGCCGuacCCGAGc -3'
miRNA:   3'- cGUUGUGGGAG--------UC-GAGGCGGU---GGCUU- -5'
10568 3' -57.9 NC_002687.1 + 83719 0.69 0.834008
Target:  5'- gGCGACACCCUC-GCUCaccuUCACCGu- -3'
miRNA:   3'- -CGUUGUGGGAGuCGAGgc--GGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 259221 0.69 0.815489
Target:  5'- aCGACGCaaaauuguugagagCCUCAGCaaugUCgGCCGCCGAGa -3'
miRNA:   3'- cGUUGUG--------------GGAGUCG----AGgCGGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 212323 0.7 0.801287
Target:  5'- cGCuGGCAUCCUCGGCgucuucgggCuCGCCACCGu- -3'
miRNA:   3'- -CG-UUGUGGGAGUCGa--------G-GCGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 297974 0.7 0.792745
Target:  5'- -aAACGCCCUUgcguuGCggCCGCCACCGc- -3'
miRNA:   3'- cgUUGUGGGAGu----CGa-GGCGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 215343 0.7 0.792745
Target:  5'- cGC--CGCCCUCGGCcCCGCCGgugUCGAAc -3'
miRNA:   3'- -CGuuGUGGGAGUCGaGGCGGU---GGCUU- -5'
10568 3' -57.9 NC_002687.1 + 11563 0.7 0.784072
Target:  5'- uGCGGCACagggucgaAGCUUCGCCACUGAGg -3'
miRNA:   3'- -CGUUGUGggag----UCGAGGCGGUGGCUU- -5'
10568 3' -57.9 NC_002687.1 + 11697 0.7 0.784072
Target:  5'- cCGACACCCgCuGCUCCugcuGCCGCCGc- -3'
miRNA:   3'- cGUUGUGGGaGuCGAGG----CGGUGGCuu -5'
10568 3' -57.9 NC_002687.1 + 225866 0.7 0.757347
Target:  5'- -aGGCACCCUUccucuuacGUUCCGCCGCCGc- -3'
miRNA:   3'- cgUUGUGGGAGu-------CGAGGCGGUGGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.