miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10568 5' -58.6 NC_002687.1 + 146373 0.66 0.946594
Target:  5'- cGGagaaGCGGCGgcGCaGGUucuugaagucGGUGGGGcGUa -3'
miRNA:   3'- -CCg---CGCCGCaaUG-CCA----------UCACCCC-CAa -5'
10568 5' -58.6 NC_002687.1 + 224125 0.66 0.946594
Target:  5'- uGGCGCuGGCGcugGCGGUGGcGGuGGc- -3'
miRNA:   3'- -CCGCG-CCGCaa-UGCCAUCaCCcCCaa -5'
10568 5' -58.6 NC_002687.1 + 48984 0.66 0.942422
Target:  5'- uGCGCgGGCGUgagAgGGU-GUGGGGa-- -3'
miRNA:   3'- cCGCG-CCGCAa--UgCCAuCACCCCcaa -5'
10568 5' -58.6 NC_002687.1 + 126553 0.66 0.933459
Target:  5'- aGCGCgGGCGUcugucgcgacCGGUGGcGGGGGc- -3'
miRNA:   3'- cCGCG-CCGCAau--------GCCAUCaCCCCCaa -5'
10568 5' -58.6 NC_002687.1 + 199135 0.67 0.92056
Target:  5'- cGGCGUcuagcucgugugugGGCGUacUggaguccugaaggaGCGGU-GUGGGGGUa -3'
miRNA:   3'- -CCGCG--------------CCGCA--A--------------UGCCAuCACCCCCAa -5'
10568 5' -58.6 NC_002687.1 + 281941 0.67 0.912477
Target:  5'- cGGuCGCGGCaggagcaGggGCGGUGccGGGGGg- -3'
miRNA:   3'- -CC-GCGCCG-------CaaUGCCAUcaCCCCCaa -5'
10568 5' -58.6 NC_002687.1 + 316052 0.67 0.907404
Target:  5'- cGGUGCGGCug-GCGGUGGUGccgauGGUg -3'
miRNA:   3'- -CCGCGCCGcaaUGCCAUCACcc---CCAa -5'
10568 5' -58.6 NC_002687.1 + 226816 0.67 0.901571
Target:  5'- uGGCgGUGGCGgugGCGGUGGcGGaGcGGUg -3'
miRNA:   3'- -CCG-CGCCGCaa-UGCCAUCaCC-C-CCAa -5'
10568 5' -58.6 NC_002687.1 + 173583 0.68 0.882864
Target:  5'- aGGCGgaGGCGgagGCGGaGGcGGGGGc- -3'
miRNA:   3'- -CCGCg-CCGCaa-UGCCaUCaCCCCCaa -5'
10568 5' -58.6 NC_002687.1 + 130738 0.68 0.876234
Target:  5'- aGCGaUGGUGUagcugGCGGUGGUGGuGGUg -3'
miRNA:   3'- cCGC-GCCGCAa----UGCCAUCACCcCCAa -5'
10568 5' -58.6 NC_002687.1 + 268107 0.68 0.869415
Target:  5'- gGGCGgGGC--UGCGGgggGG-GGGGGg- -3'
miRNA:   3'- -CCGCgCCGcaAUGCCa--UCaCCCCCaa -5'
10568 5' -58.6 NC_002687.1 + 224197 0.69 0.824764
Target:  5'- uGGCgGUGGCGgugGCGGUggcGGUGGcGGUg -3'
miRNA:   3'- -CCG-CGCCGCaa-UGCCA---UCACCcCCAa -5'
10568 5' -58.6 NC_002687.1 + 24065 0.69 0.816751
Target:  5'- cGGaGgGGCGUcgGCGGUgAGgggGGGGGUg -3'
miRNA:   3'- -CCgCgCCGCAa-UGCCA-UCa--CCCCCAa -5'
10568 5' -58.6 NC_002687.1 + 172284 0.69 0.816751
Target:  5'- -cUGCGGUGgggaACGGUGGgggcGGGGGUg -3'
miRNA:   3'- ccGCGCCGCaa--UGCCAUCa---CCCCCAa -5'
10568 5' -58.6 NC_002687.1 + 223469 0.7 0.783304
Target:  5'- uGGUGCuGGCGgagguucgggaUGCGGUGGcGGGGGc- -3'
miRNA:   3'- -CCGCG-CCGCa----------AUGCCAUCaCCCCCaa -5'
10568 5' -58.6 NC_002687.1 + 307616 0.7 0.783304
Target:  5'- gGGCgGCGGCGgUGCuGGUGGUGGaGGc- -3'
miRNA:   3'- -CCG-CGCCGCaAUG-CCAUCACCcCCaa -5'
10568 5' -58.6 NC_002687.1 + 77429 0.7 0.774627
Target:  5'- aGCGuCGGCGg-AUGG-AGUGGGGGa- -3'
miRNA:   3'- cCGC-GCCGCaaUGCCaUCACCCCCaa -5'
10568 5' -58.6 NC_002687.1 + 69045 0.71 0.711197
Target:  5'- uGGUgGCGGCGgugGCGGUGGUGucGGcGGUg -3'
miRNA:   3'- -CCG-CGCCGCaa-UGCCAUCAC--CC-CCAa -5'
10568 5' -58.6 NC_002687.1 + 224161 0.79 0.299837
Target:  5'- uGGCGCuGGCGgugGCGGUGGcGGGGGc- -3'
miRNA:   3'- -CCGCG-CCGCaa-UGCCAUCaCCCCCaa -5'
10568 5' -58.6 NC_002687.1 + 295854 1.08 0.004743
Target:  5'- aGGCGCGGCGUUACGGUAGUGGGGGUUg -3'
miRNA:   3'- -CCGCGCCGCAAUGCCAUCACCCCCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.