miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10569 3' -47 NC_002687.1 + 171041 0.66 0.999998
Target:  5'- ---cGUgGACGuCGUUGGGCAaGUUGg -3'
miRNA:   3'- uuuuUAgUUGCcGCAACCCGUaCAAU- -5'
10569 3' -47 NC_002687.1 + 282053 0.66 0.999998
Target:  5'- ----cUCAGCGGCGgcagGGGCcguaGUGg-- -3'
miRNA:   3'- uuuuuAGUUGCCGCaa--CCCG----UACaau -5'
10569 3' -47 NC_002687.1 + 33785 0.66 0.999996
Target:  5'- ----uUCAugGGUGgacccgaUGGGCAUGa-- -3'
miRNA:   3'- uuuuuAGUugCCGCa------ACCCGUACaau -5'
10569 3' -47 NC_002687.1 + 307652 0.67 0.999991
Target:  5'- uGGGAUCGGCGGCGgu-GGCGgugGUg- -3'
miRNA:   3'- uUUUUAGUUGCCGCaacCCGUa--CAau -5'
10569 3' -47 NC_002687.1 + 178911 0.67 0.999984
Target:  5'- -----gCAACGGCG-UGGGCAa---- -3'
miRNA:   3'- uuuuuaGUUGCCGCaACCCGUacaau -5'
10569 3' -47 NC_002687.1 + 48976 0.67 0.999978
Target:  5'- ------uGGCGGCGUgcgcGGGCGUGa-- -3'
miRNA:   3'- uuuuuagUUGCCGCAa---CCCGUACaau -5'
10569 3' -47 NC_002687.1 + 99407 0.67 0.999975
Target:  5'- ---uGUCAGCGGCGUUgucgaagacuccaaGGGCGUu--- -3'
miRNA:   3'- uuuuUAGUUGCCGCAA--------------CCCGUAcaau -5'
10569 3' -47 NC_002687.1 + 18619 0.67 0.99997
Target:  5'- cGAAuAUCGGCGGgGgUGGGUGUGa-- -3'
miRNA:   3'- -UUUuUAGUUGCCgCaACCCGUACaau -5'
10569 3' -47 NC_002687.1 + 153567 0.68 0.999945
Target:  5'- -cAGGUUGACGGUGUUGGuCAUGg-- -3'
miRNA:   3'- uuUUUAGUUGCCGCAACCcGUACaau -5'
10569 3' -47 NC_002687.1 + 162564 0.68 0.999928
Target:  5'- ---uGUCGAUGGCaucGGGCAUGUc- -3'
miRNA:   3'- uuuuUAGUUGCCGcaaCCCGUACAau -5'
10569 3' -47 NC_002687.1 + 125244 0.69 0.999796
Target:  5'- --uGGUCAACGGCGUcu-GCAUGUg- -3'
miRNA:   3'- uuuUUAGUUGCCGCAaccCGUACAau -5'
10569 3' -47 NC_002687.1 + 138769 0.71 0.997538
Target:  5'- -cGGGUCGACaGGC-UUGGGCAUGg-- -3'
miRNA:   3'- uuUUUAGUUG-CCGcAACCCGUACaau -5'
10569 3' -47 NC_002687.1 + 332256 0.75 0.979648
Target:  5'- -----gCGGCGGCGcUUGGGCGUGg-- -3'
miRNA:   3'- uuuuuaGUUGCCGC-AACCCGUACaau -5'
10569 3' -47 NC_002687.1 + 296876 1.05 0.064153
Target:  5'- uAAAAAUCAACGGCGUUGGGCAUGUUAc -3'
miRNA:   3'- -UUUUUAGUUGCCGCAACCCGUACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.