miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10569 5' -60.9 NC_002687.1 + 79979 0.66 0.879909
Target:  5'- cAGCaGugGCCUCGACaucGUCgAUCGGGAUa -3'
miRNA:   3'- -UCG-CugCGGGGCUGc--CGG-UAGCUCUA- -5'
10569 5' -60.9 NC_002687.1 + 204816 0.66 0.859498
Target:  5'- cGUGAacaCGCgCCCGACaaucccuccaGCCGUCGAGGUg -3'
miRNA:   3'- uCGCU---GCG-GGGCUGc---------CGGUAGCUCUA- -5'
10569 5' -60.9 NC_002687.1 + 295920 0.66 0.859498
Target:  5'- cGC-ACGaCCCCGuuGCGGCCAUgaauuauugCGAGAa -3'
miRNA:   3'- uCGcUGC-GGGGC--UGCCGGUA---------GCUCUa -5'
10569 5' -60.9 NC_002687.1 + 225624 0.66 0.85234
Target:  5'- gAG-GACGCaCCgGugGGCgGUCGAGc- -3'
miRNA:   3'- -UCgCUGCG-GGgCugCCGgUAGCUCua -5'
10569 5' -60.9 NC_002687.1 + 11101 0.67 0.829093
Target:  5'- -cCGACGCCCCGuACGGgauguucacgaucCCGUCG-GAg -3'
miRNA:   3'- ucGCUGCGGGGC-UGCC-------------GGUAGCuCUa -5'
10569 5' -60.9 NC_002687.1 + 219061 0.67 0.822063
Target:  5'- cGGCG-UGCUCCG-CGGCCAcgGAGAa -3'
miRNA:   3'- -UCGCuGCGGGGCuGCCGGUagCUCUa -5'
10569 5' -60.9 NC_002687.1 + 297299 0.67 0.813308
Target:  5'- uGCGGCGCgcgcggggagcagCCaaaugaucuCGAUGGCCGUCGGGGc -3'
miRNA:   3'- uCGCUGCG-------------GG---------GCUGCCGGUAGCUCUa -5'
10569 5' -60.9 NC_002687.1 + 98387 0.67 0.797795
Target:  5'- aAGCcuaGgGCCUCGACGGCUGcCGAGAUc -3'
miRNA:   3'- -UCGc--UgCGGGGCUGCCGGUaGCUCUA- -5'
10569 5' -60.9 NC_002687.1 + 266762 0.67 0.797795
Target:  5'- gGGUGAUGCCCCGGCcucuGUUGUgGAGAc -3'
miRNA:   3'- -UCGCUGCGGGGCUGc---CGGUAgCUCUa -5'
10569 5' -60.9 NC_002687.1 + 146155 0.68 0.789442
Target:  5'- aGGCGcGCGUCCauguccgaGGCGGCCAUCGccGAg -3'
miRNA:   3'- -UCGC-UGCGGGg-------CUGCCGGUAGCu-CUa -5'
10569 5' -60.9 NC_002687.1 + 252348 0.68 0.780969
Target:  5'- gAG-GACGCCgCgCGACGGCCgAUCGAa-- -3'
miRNA:   3'- -UCgCUGCGG-G-GCUGCCGG-UAGCUcua -5'
10569 5' -60.9 NC_002687.1 + 291308 0.68 0.772382
Target:  5'- cGCGGUGCCCa-GCGGCCG-CGAGGc -3'
miRNA:   3'- uCGCUGCGGGgcUGCCGGUaGCUCUa -5'
10569 5' -60.9 NC_002687.1 + 142138 0.69 0.708779
Target:  5'- uGGCGAUGCCaagguugCCGGCGGCgAUCGccGAg -3'
miRNA:   3'- -UCGCUGCGG-------GGCUGCCGgUAGCu-CUa -5'
10569 5' -60.9 NC_002687.1 + 35222 0.69 0.700464
Target:  5'- gGGUGGCGUCCUca-GGUCGUCGGGAa -3'
miRNA:   3'- -UCGCUGCGGGGcugCCGGUAGCUCUa -5'
10569 5' -60.9 NC_002687.1 + 277502 0.7 0.681852
Target:  5'- cGCGcUGCCUcguCGGCGGCCAUCG-GAc -3'
miRNA:   3'- uCGCuGCGGG---GCUGCCGGUAGCuCUa -5'
10569 5' -60.9 NC_002687.1 + 226933 0.71 0.587759
Target:  5'- gGGCGuCGCCCCGuCGGCUccGUCGGc-- -3'
miRNA:   3'- -UCGCuGCGGGGCuGCCGG--UAGCUcua -5'
10569 5' -60.9 NC_002687.1 + 85634 0.71 0.578403
Target:  5'- cAGgGAgGCCuuGugGGCCAgCGGGAc -3'
miRNA:   3'- -UCgCUgCGGggCugCCGGUaGCUCUa -5'
10569 5' -60.9 NC_002687.1 + 298845 0.72 0.550554
Target:  5'- aAGCGACGCCaaGACcaUCGUCGAGAUa -3'
miRNA:   3'- -UCGCUGCGGggCUGccGGUAGCUCUA- -5'
10569 5' -60.9 NC_002687.1 + 155815 0.74 0.452909
Target:  5'- cAGCG-CGCCCCGAUuGCCGUgaCGAGGUc -3'
miRNA:   3'- -UCGCuGCGGGGCUGcCGGUA--GCUCUA- -5'
10569 5' -60.9 NC_002687.1 + 296910 1.05 0.004844
Target:  5'- aAGCGACGCCCCGACGGCCAUCGAGAUc -3'
miRNA:   3'- -UCGCUGCGGGGCUGCCGGUAGCUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.