Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1057 | 5' | -60.4 | NC_000929.1 | + | 26950 | 0.66 | 0.341797 |
Target: 5'- cCGGACAGCGCCCccaucagcgaGGAgGC--CAGCa- -3' miRNA: 3'- -GUCUGUCGCGGG----------CCUgCGcuGUCGcc -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 16509 | 0.66 | 0.349995 |
Target: 5'- -uGGCAGaacaCGCCCGGaacauGCGCGGCuGCa- -3' miRNA: 3'- guCUGUC----GCGGGCC-----UGCGCUGuCGcc -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 9092 | 0.66 | 0.357492 |
Target: 5'- --uACGGUGUacaaagccauucgCCGGAUGCGACGGCu- -3' miRNA: 3'- gucUGUCGCG-------------GGCCUGCGCUGUCGcc -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 1125 | 0.66 | 0.375419 |
Target: 5'- -uGGCAuCGUgCGGAUGUGAUuGCGGg -3' miRNA: 3'- guCUGUcGCGgGCCUGCGCUGuCGCC- -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 22996 | 0.67 | 0.309648 |
Target: 5'- aCGGAUGGCGUcaccacggccugaCCGGugGCaa-AGCGGg -3' miRNA: 3'- -GUCUGUCGCG-------------GGCCugCGcugUCGCC- -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 25531 | 0.67 | 0.29337 |
Target: 5'- cCAG-CGGCugugGCCCGGACagcaauaacggcugGCGggguaACAGCGGg -3' miRNA: 3'- -GUCuGUCG----CGGGCCUG--------------CGC-----UGUCGCC- -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 16044 | 0.68 | 0.267513 |
Target: 5'- -uGGgGGCGUCUGGAUGCcGCAGCa- -3' miRNA: 3'- guCUgUCGCGGGCCUGCGcUGUCGcc -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 15060 | 0.69 | 0.229539 |
Target: 5'- gCAGaACAGCG-CCGGAuCGCGaugauGCAGCGc -3' miRNA: 3'- -GUC-UGUCGCgGGCCU-GCGC-----UGUCGCc -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 2081 | 0.69 | 0.247925 |
Target: 5'- aCAG-CAGCGaacuguggaacaCCUGGACGCcauGCAGUGGa -3' miRNA: 3'- -GUCuGUCGC------------GGGCCUGCGc--UGUCGCC- -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 11970 | 0.71 | 0.167204 |
Target: 5'- gGGACAGCaCCCGGAuauCGCcgGACAGCu- -3' miRNA: 3'- gUCUGUCGcGGGCCU---GCG--CUGUCGcc -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 24094 | 0.73 | 0.130875 |
Target: 5'- -uGGCAGUG-CCGGaaaaaGCGgGACAGCGGg -3' miRNA: 3'- guCUGUCGCgGGCC-----UGCgCUGUCGCC- -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 6653 | 0.76 | 0.068655 |
Target: 5'- aCAGGCGGCG-UCGGACGCGGgcGCGGa -3' miRNA: 3'- -GUCUGUCGCgGGCCUGCGCUguCGCC- -5' |
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1057 | 5' | -60.4 | NC_000929.1 | + | 16670 | 1.08 | 0.000231 |
Target: 5'- gCAGACAGCGCCCGGACGCGACAGCGGc -3' miRNA: 3'- -GUCUGUCGCGGGCCUGCGCUGUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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