miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1057 5' -60.4 NC_000929.1 + 26950 0.66 0.341797
Target:  5'- cCGGACAGCGCCCccaucagcgaGGAgGC--CAGCa- -3'
miRNA:   3'- -GUCUGUCGCGGG----------CCUgCGcuGUCGcc -5'
1057 5' -60.4 NC_000929.1 + 16509 0.66 0.349995
Target:  5'- -uGGCAGaacaCGCCCGGaacauGCGCGGCuGCa- -3'
miRNA:   3'- guCUGUC----GCGGGCC-----UGCGCUGuCGcc -5'
1057 5' -60.4 NC_000929.1 + 9092 0.66 0.357492
Target:  5'- --uACGGUGUacaaagccauucgCCGGAUGCGACGGCu- -3'
miRNA:   3'- gucUGUCGCG-------------GGCCUGCGCUGUCGcc -5'
1057 5' -60.4 NC_000929.1 + 1125 0.66 0.375419
Target:  5'- -uGGCAuCGUgCGGAUGUGAUuGCGGg -3'
miRNA:   3'- guCUGUcGCGgGCCUGCGCUGuCGCC- -5'
1057 5' -60.4 NC_000929.1 + 22996 0.67 0.309648
Target:  5'- aCGGAUGGCGUcaccacggccugaCCGGugGCaa-AGCGGg -3'
miRNA:   3'- -GUCUGUCGCG-------------GGCCugCGcugUCGCC- -5'
1057 5' -60.4 NC_000929.1 + 25531 0.67 0.29337
Target:  5'- cCAG-CGGCugugGCCCGGACagcaauaacggcugGCGggguaACAGCGGg -3'
miRNA:   3'- -GUCuGUCG----CGGGCCUG--------------CGC-----UGUCGCC- -5'
1057 5' -60.4 NC_000929.1 + 16044 0.68 0.267513
Target:  5'- -uGGgGGCGUCUGGAUGCcGCAGCa- -3'
miRNA:   3'- guCUgUCGCGGGCCUGCGcUGUCGcc -5'
1057 5' -60.4 NC_000929.1 + 15060 0.69 0.229539
Target:  5'- gCAGaACAGCG-CCGGAuCGCGaugauGCAGCGc -3'
miRNA:   3'- -GUC-UGUCGCgGGCCU-GCGC-----UGUCGCc -5'
1057 5' -60.4 NC_000929.1 + 2081 0.69 0.247925
Target:  5'- aCAG-CAGCGaacuguggaacaCCUGGACGCcauGCAGUGGa -3'
miRNA:   3'- -GUCuGUCGC------------GGGCCUGCGc--UGUCGCC- -5'
1057 5' -60.4 NC_000929.1 + 11970 0.71 0.167204
Target:  5'- gGGACAGCaCCCGGAuauCGCcgGACAGCu- -3'
miRNA:   3'- gUCUGUCGcGGGCCU---GCG--CUGUCGcc -5'
1057 5' -60.4 NC_000929.1 + 24094 0.73 0.130875
Target:  5'- -uGGCAGUG-CCGGaaaaaGCGgGACAGCGGg -3'
miRNA:   3'- guCUGUCGCgGGCC-----UGCgCUGUCGCC- -5'
1057 5' -60.4 NC_000929.1 + 6653 0.76 0.068655
Target:  5'- aCAGGCGGCG-UCGGACGCGGgcGCGGa -3'
miRNA:   3'- -GUCUGUCGCgGGCCUGCGCUguCGCC- -5'
1057 5' -60.4 NC_000929.1 + 16670 1.08 0.000231
Target:  5'- gCAGACAGCGCCCGGACGCGACAGCGGc -3'
miRNA:   3'- -GUCUGUCGCGGGCCUGCGCUGUCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.