miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10570 3' -49.3 NC_002687.1 + 83593 0.66 0.999976
Target:  5'- -aCggCGCGACGCCu-UUGAUuAACUUu -3'
miRNA:   3'- gaGuaGCGCUGCGGcuAACUA-UUGAG- -5'
10570 3' -49.3 NC_002687.1 + 180630 0.66 0.999976
Target:  5'- --gGUCGCGAUGCUc--UGaAUGACUCg -3'
miRNA:   3'- gagUAGCGCUGCGGcuaAC-UAUUGAG- -5'
10570 3' -49.3 NC_002687.1 + 69882 0.66 0.999968
Target:  5'- -cCAUCGCGAcauuguuguCGCCGAcgucGGUGACg- -3'
miRNA:   3'- gaGUAGCGCU---------GCGGCUaa--CUAUUGag -5'
10570 3' -49.3 NC_002687.1 + 297440 0.66 0.999968
Target:  5'- gCUCAUCGCGACGCacaa-GGUcAGCg- -3'
miRNA:   3'- -GAGUAGCGCUGCGgcuaaCUA-UUGag -5'
10570 3' -49.3 NC_002687.1 + 263017 0.66 0.999968
Target:  5'- ----cCGCGACGUCGuuGUUGGUGGC-Cg -3'
miRNA:   3'- gaguaGCGCUGCGGC--UAACUAUUGaG- -5'
10570 3' -49.3 NC_002687.1 + 232219 0.66 0.999958
Target:  5'- -cUAUCG-GAUGCCGAacggcgagGGUGACUCc -3'
miRNA:   3'- gaGUAGCgCUGCGGCUaa------CUAUUGAG- -5'
10570 3' -49.3 NC_002687.1 + 241164 0.66 0.999958
Target:  5'- -aCGUCGUGugGCCGAgcaucucUGAUuuuCUUc -3'
miRNA:   3'- gaGUAGCGCugCGGCUa------ACUAuu-GAG- -5'
10570 3' -49.3 NC_002687.1 + 103953 0.66 0.999944
Target:  5'- aUCGUCG-GACGCUGGccuUUGuguucGUGGCUCu -3'
miRNA:   3'- gAGUAGCgCUGCGGCU---AAC-----UAUUGAG- -5'
10570 3' -49.3 NC_002687.1 + 176213 0.66 0.999927
Target:  5'- uCUCG-CGCGAUGUCGAgcaUGAUcgUUCc -3'
miRNA:   3'- -GAGUaGCGCUGCGGCUa--ACUAuuGAG- -5'
10570 3' -49.3 NC_002687.1 + 77561 0.66 0.999927
Target:  5'- -gCAUUGCGAgGCCG--UGAUGAUg- -3'
miRNA:   3'- gaGUAGCGCUgCGGCuaACUAUUGag -5'
10570 3' -49.3 NC_002687.1 + 247698 0.67 0.999905
Target:  5'- aUCAauUCGCcACGCUGAUUGAUuuGCa- -3'
miRNA:   3'- gAGU--AGCGcUGCGGCUAACUAu-UGag -5'
10570 3' -49.3 NC_002687.1 + 305168 0.67 0.999905
Target:  5'- --aGUUGUGGCGUCGGUUGGgcgGACg- -3'
miRNA:   3'- gagUAGCGCUGCGGCUAACUa--UUGag -5'
10570 3' -49.3 NC_002687.1 + 57136 0.67 0.999844
Target:  5'- -gCAUCgGCGGCGCUGAUggccaUGAguugAGCUUc -3'
miRNA:   3'- gaGUAG-CGCUGCGGCUA-----ACUa---UUGAG- -5'
10570 3' -49.3 NC_002687.1 + 251990 0.67 0.999844
Target:  5'- ----gCGCGGCGCCGAggGGUAccgGCg- -3'
miRNA:   3'- gaguaGCGCUGCGGCUaaCUAU---UGag -5'
10570 3' -49.3 NC_002687.1 + 116192 0.67 0.99975
Target:  5'- -gCAUCG-GACGCgGGUUGAUAAa-- -3'
miRNA:   3'- gaGUAGCgCUGCGgCUAACUAUUgag -5'
10570 3' -49.3 NC_002687.1 + 104486 0.67 0.99975
Target:  5'- aUCAUgGgGAUGCCGAUcgGAUAGgCUg -3'
miRNA:   3'- gAGUAgCgCUGCGGCUAa-CUAUU-GAg -5'
10570 3' -49.3 NC_002687.1 + 152200 0.68 0.999687
Target:  5'- gUCGUcCGCGuCGCCGAUaUGcAUGACa- -3'
miRNA:   3'- gAGUA-GCGCuGCGGCUA-AC-UAUUGag -5'
10570 3' -49.3 NC_002687.1 + 99549 0.68 0.999517
Target:  5'- gUCGUCGCGGCGCucgcgCGAUcGAUAGa-- -3'
miRNA:   3'- gAGUAGCGCUGCG-----GCUAaCUAUUgag -5'
10570 3' -49.3 NC_002687.1 + 307106 0.69 0.999113
Target:  5'- gCUCGUC-CGAagcuCGCCGAUUGuuuuccaagaAUGGCUCc -3'
miRNA:   3'- -GAGUAGcGCU----GCGGCUAAC----------UAUUGAG- -5'
10570 3' -49.3 NC_002687.1 + 114073 0.69 0.998926
Target:  5'- --aAUCGCGGuCGCCGucguggUGGUGGCUa -3'
miRNA:   3'- gagUAGCGCU-GCGGCua----ACUAUUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.