Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10570 | 3' | -49.3 | NC_002687.1 | + | 69882 | 0.66 | 0.999968 |
Target: 5'- -cCAUCGCGAcauuguuguCGCCGAcgucGGUGACg- -3' miRNA: 3'- gaGUAGCGCU---------GCGGCUaa--CUAUUGag -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 84713 | 0.77 | 0.882418 |
Target: 5'- gUCGUCGCGACGUugaCGGUUGcggcgGACUCa -3' miRNA: 3'- gAGUAGCGCUGCG---GCUAACua---UUGAG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 103886 | 0.7 | 0.996423 |
Target: 5'- uUCAUCGCGAUGaacuCCGGUgugaaaaacuUGAgUAGCUCg -3' miRNA: 3'- gAGUAGCGCUGC----GGCUA----------ACU-AUUGAG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 114073 | 0.69 | 0.998926 |
Target: 5'- --aAUCGCGGuCGCCGucguggUGGUGGCUa -3' miRNA: 3'- gagUAGCGCU-GCGGCua----ACUAUUGAg -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 152200 | 0.68 | 0.999687 |
Target: 5'- gUCGUcCGCGuCGCCGAUaUGcAUGACa- -3' miRNA: 3'- gAGUA-GCGCuGCGGCUA-AC-UAUUGag -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 116192 | 0.67 | 0.99975 |
Target: 5'- -gCAUCG-GACGCgGGUUGAUAAa-- -3' miRNA: 3'- gaGUAGCgCUGCGgCUAACUAUUgag -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 104486 | 0.67 | 0.99975 |
Target: 5'- aUCAUgGgGAUGCCGAUcgGAUAGgCUg -3' miRNA: 3'- gAGUAgCgCUGCGGCUAa-CUAUU-GAg -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 305168 | 0.67 | 0.999905 |
Target: 5'- --aGUUGUGGCGUCGGUUGGgcgGACg- -3' miRNA: 3'- gagUAGCGCUGCGGCUAACUa--UUGag -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 176213 | 0.66 | 0.999927 |
Target: 5'- uCUCG-CGCGAUGUCGAgcaUGAUcgUUCc -3' miRNA: 3'- -GAGUaGCGCUGCGGCUa--ACUAuuGAG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 77561 | 0.66 | 0.999927 |
Target: 5'- -gCAUUGCGAgGCCG--UGAUGAUg- -3' miRNA: 3'- gaGUAGCGCUgCGGCuaACUAUUGag -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 241164 | 0.66 | 0.999958 |
Target: 5'- -aCGUCGUGugGCCGAgcaucucUGAUuuuCUUc -3' miRNA: 3'- gaGUAGCGCugCGGCUa------ACUAuu-GAG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 263017 | 0.66 | 0.999968 |
Target: 5'- ----cCGCGACGUCGuuGUUGGUGGC-Cg -3' miRNA: 3'- gaguaGCGCUGCGGC--UAACUAUUGaG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 57136 | 0.67 | 0.999844 |
Target: 5'- -gCAUCgGCGGCGCUGAUggccaUGAguugAGCUUc -3' miRNA: 3'- gaGUAG-CGCUGCGGCUA-----ACUa---UUGAG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 99549 | 0.68 | 0.999517 |
Target: 5'- gUCGUCGCGGCGCucgcgCGAUcGAUAGa-- -3' miRNA: 3'- gAGUAGCGCUGCG-----GCUAaCUAUUgag -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 307106 | 0.69 | 0.999113 |
Target: 5'- gCUCGUC-CGAagcuCGCCGAUUGuuuuccaagaAUGGCUCc -3' miRNA: 3'- -GAGUAGcGCU----GCGGCUAAC----------UAUUGAG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 34801 | 0.71 | 0.994399 |
Target: 5'- uCUC--CGUGACGCCGA--GAUAugUCa -3' miRNA: 3'- -GAGuaGCGCUGCGGCUaaCUAUugAG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 23810 | 0.71 | 0.994399 |
Target: 5'- gCUCAa-GCGAgGCCGAUUG-UAACUa -3' miRNA: 3'- -GAGUagCGCUgCGGCUAACuAUUGAg -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 84366 | 0.74 | 0.973206 |
Target: 5'- -aCGUCGCGACGaCGGUgacgGAUAACcUCa -3' miRNA: 3'- gaGUAGCGCUGCgGCUAa---CUAUUG-AG- -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 297662 | 0.74 | 0.970426 |
Target: 5'- uUCA-CGCGACGCCGAUcUGAUucAGCg- -3' miRNA: 3'- gAGUaGCGCUGCGGCUA-ACUA--UUGag -5' |
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10570 | 3' | -49.3 | NC_002687.1 | + | 180630 | 0.66 | 0.999976 |
Target: 5'- --gGUCGCGAUGCUc--UGaAUGACUCg -3' miRNA: 3'- gagUAGCGCUGCGGcuaAC-UAUUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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