miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10570 5' -55.5 NC_002687.1 + 99215 0.66 0.988732
Target:  5'- uCGGGGAUGGuGUugGCUCccaCGCGGCGg -3'
miRNA:   3'- -GCCUCUGUC-CGuaCGAGua-GCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 116463 0.66 0.988732
Target:  5'- aGGGGAUacguguaacaAGGCGUGUccacuugucaUCAUCaCGGCGg -3'
miRNA:   3'- gCCUCUG----------UCCGUACG----------AGUAGcGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 271749 0.66 0.988732
Target:  5'- aGGugcaucGACGGGCGaGCUCAUUGaGGCa -3'
miRNA:   3'- gCCu-----CUGUCCGUaCGAGUAGCgCUGc -5'
10570 5' -55.5 NC_002687.1 + 258834 0.66 0.988732
Target:  5'- uGGAGACGGuGC-UGCgacgUCuUCGUGGCa -3'
miRNA:   3'- gCCUCUGUC-CGuACG----AGuAGCGCUGc -5'
10570 5' -55.5 NC_002687.1 + 90055 0.66 0.985804
Target:  5'- gCGGAGACAccguggacacGGCAUccaUgAUCGCGGCc -3'
miRNA:   3'- -GCCUCUGU----------CCGUAcg-AgUAGCGCUGc -5'
10570 5' -55.5 NC_002687.1 + 149473 0.66 0.985804
Target:  5'- uGGGGAuCAGGgaGUGUUCcauuggaCGCGACGg -3'
miRNA:   3'- gCCUCU-GUCCg-UACGAGua-----GCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 252642 0.66 0.985804
Target:  5'- aCGGAGACcuGUGUGCUCAgauucucaaaGUGGCu -3'
miRNA:   3'- -GCCUCUGucCGUACGAGUag--------CGCUGc -5'
10570 5' -55.5 NC_002687.1 + 237124 0.66 0.985644
Target:  5'- aCGGAaacagccugcagcGGCuGGGCAgGCUCA-CGCGGCu -3'
miRNA:   3'- -GCCU-------------CUG-UCCGUaCGAGUaGCGCUGc -5'
10570 5' -55.5 NC_002687.1 + 84964 0.66 0.982327
Target:  5'- uCGucGAC-GGCAcGUUCAUCGUGAUGg -3'
miRNA:   3'- -GCcuCUGuCCGUaCGAGUAGCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 299380 0.66 0.982327
Target:  5'- cCGGAGACGGGUcUGCUCAcUCaacccCGAa- -3'
miRNA:   3'- -GCCUCUGUCCGuACGAGU-AGc----GCUgc -5'
10570 5' -55.5 NC_002687.1 + 103533 0.67 0.981168
Target:  5'- gGGAGACAGaGCGggcgacgggaugugUGCgggggagaugcuugUCAUCGCGAg- -3'
miRNA:   3'- gCCUCUGUC-CGU--------------ACG--------------AGUAGCGCUgc -5'
10570 5' -55.5 NC_002687.1 + 327538 0.67 0.980365
Target:  5'- gGGGGuCGGGCGUaGCU--UCGaCGGCGa -3'
miRNA:   3'- gCCUCuGUCCGUA-CGAguAGC-GCUGC- -5'
10570 5' -55.5 NC_002687.1 + 3948 0.67 0.979113
Target:  5'- -aGAGGgcacugugcaucuacCAGGUacgugcgcauGUGCUCGUCGUGACGu -3'
miRNA:   3'- gcCUCU---------------GUCCG----------UACGAGUAGCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 179568 0.67 0.978245
Target:  5'- aCGGAauGAacuuaacaAGGUuuacauUGCUUAUCGCGGCGu -3'
miRNA:   3'- -GCCU--CUg-------UCCGu-----ACGAGUAGCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 200168 0.67 0.975243
Target:  5'- gCGGAGGCGacuGuGCAccgcgucguugacaUGCUCcUUGCGGCGg -3'
miRNA:   3'- -GCCUCUGU---C-CGU--------------ACGAGuAGCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 330560 0.67 0.972475
Target:  5'- uGGAGugGugguGGCGUGCacaugccggcagcCGUCGUGGCGa -3'
miRNA:   3'- gCCUCugU----CCGUACGa------------GUAGCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 233788 0.67 0.96806
Target:  5'- cCGcGAGGCAGcGCGUGC-CAaaGCGGCc -3'
miRNA:   3'- -GC-CUCUGUC-CGUACGaGUagCGCUGc -5'
10570 5' -55.5 NC_002687.1 + 299333 0.67 0.96806
Target:  5'- cCGGAGGCGGGCGcagcgcUGCUCAauuucucCGCaaaGACu -3'
miRNA:   3'- -GCCUCUGUCCGU------ACGAGUa------GCG---CUGc -5'
10570 5' -55.5 NC_002687.1 + 260210 0.68 0.961863
Target:  5'- cCGaGAGACAGGC-UGCgaa-CGCGGCc -3'
miRNA:   3'- -GC-CUCUGUCCGuACGaguaGCGCUGc -5'
10570 5' -55.5 NC_002687.1 + 156615 0.68 0.95108
Target:  5'- gCGGAGcuguuCAGGauggGCUCGUC-CGACGa -3'
miRNA:   3'- -GCCUCu----GUCCgua-CGAGUAGcGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.