Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10570 | 5' | -55.5 | NC_002687.1 | + | 99215 | 0.66 | 0.988732 |
Target: 5'- uCGGGGAUGGuGUugGCUCccaCGCGGCGg -3' miRNA: 3'- -GCCUCUGUC-CGuaCGAGua-GCGCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 299380 | 0.66 | 0.982327 |
Target: 5'- cCGGAGACGGGUcUGCUCAcUCaacccCGAa- -3' miRNA: 3'- -GCCUCUGUCCGuACGAGU-AGc----GCUgc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 252642 | 0.66 | 0.985804 |
Target: 5'- aCGGAGACcuGUGUGCUCAgauucucaaaGUGGCu -3' miRNA: 3'- -GCCUCUGucCGUACGAGUag--------CGCUGc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 84964 | 0.66 | 0.982327 |
Target: 5'- uCGucGAC-GGCAcGUUCAUCGUGAUGg -3' miRNA: 3'- -GCcuCUGuCCGUaCGAGUAGCGCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 237124 | 0.66 | 0.985644 |
Target: 5'- aCGGAaacagccugcagcGGCuGGGCAgGCUCA-CGCGGCu -3' miRNA: 3'- -GCCU-------------CUG-UCCGUaCGAGUaGCGCUGc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 149473 | 0.66 | 0.985804 |
Target: 5'- uGGGGAuCAGGgaGUGUUCcauuggaCGCGACGg -3' miRNA: 3'- gCCUCU-GUCCg-UACGAGua-----GCGCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 90055 | 0.66 | 0.985804 |
Target: 5'- gCGGAGACAccguggacacGGCAUccaUgAUCGCGGCc -3' miRNA: 3'- -GCCUCUGU----------CCGUAcg-AgUAGCGCUGc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 258834 | 0.66 | 0.988732 |
Target: 5'- uGGAGACGGuGC-UGCgacgUCuUCGUGGCa -3' miRNA: 3'- gCCUCUGUC-CGuACG----AGuAGCGCUGc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 271749 | 0.66 | 0.988732 |
Target: 5'- aGGugcaucGACGGGCGaGCUCAUUGaGGCa -3' miRNA: 3'- gCCu-----CUGUCCGUaCGAGUAGCgCUGc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 116463 | 0.66 | 0.988732 |
Target: 5'- aGGGGAUacguguaacaAGGCGUGUccacuugucaUCAUCaCGGCGg -3' miRNA: 3'- gCCUCUG----------UCCGUACG----------AGUAGcGCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 3948 | 0.67 | 0.979113 |
Target: 5'- -aGAGGgcacugugcaucuacCAGGUacgugcgcauGUGCUCGUCGUGACGu -3' miRNA: 3'- gcCUCU---------------GUCCG----------UACGAGUAGCGCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 330560 | 0.67 | 0.972475 |
Target: 5'- uGGAGugGugguGGCGUGCacaugccggcagcCGUCGUGGCGa -3' miRNA: 3'- gCCUCugU----CCGUACGa------------GUAGCGCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 233788 | 0.67 | 0.96806 |
Target: 5'- cCGcGAGGCAGcGCGUGC-CAaaGCGGCc -3' miRNA: 3'- -GC-CUCUGUC-CGUACGaGUagCGCUGc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 299333 | 0.67 | 0.96806 |
Target: 5'- cCGGAGGCGGGCGcagcgcUGCUCAauuucucCGCaaaGACu -3' miRNA: 3'- -GCCUCUGUCCGU------ACGAGUa------GCG---CUGc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 179568 | 0.67 | 0.978245 |
Target: 5'- aCGGAauGAacuuaacaAGGUuuacauUGCUUAUCGCGGCGu -3' miRNA: 3'- -GCCU--CUg-------UCCGu-----ACGAGUAGCGCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 327538 | 0.67 | 0.980365 |
Target: 5'- gGGGGuCGGGCGUaGCU--UCGaCGGCGa -3' miRNA: 3'- gCCUCuGUCCGUA-CGAguAGC-GCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 103533 | 0.67 | 0.981168 |
Target: 5'- gGGAGACAGaGCGggcgacgggaugugUGCgggggagaugcuugUCAUCGCGAg- -3' miRNA: 3'- gCCUCUGUC-CGU--------------ACG--------------AGUAGCGCUgc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 200168 | 0.67 | 0.975243 |
Target: 5'- gCGGAGGCGacuGuGCAccgcgucguugacaUGCUCcUUGCGGCGg -3' miRNA: 3'- -GCCUCUGU---C-CGU--------------ACGAGuAGCGCUGC- -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 260210 | 0.68 | 0.961863 |
Target: 5'- cCGaGAGACAGGC-UGCgaa-CGCGGCc -3' miRNA: 3'- -GC-CUCUGUCCGuACGaguaGCGCUGc -5' |
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10570 | 5' | -55.5 | NC_002687.1 | + | 156615 | 0.68 | 0.95108 |
Target: 5'- gCGGAGcuguuCAGGauggGCUCGUC-CGACGa -3' miRNA: 3'- -GCCUCu----GUCCgua-CGAGUAGcGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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