miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10570 5' -55.5 NC_002687.1 + 11181 0.69 0.947074
Target:  5'- uGGGGACGGGgGUGCaaauguggCAcCGgGACGg -3'
miRNA:   3'- gCCUCUGUCCgUACGa-------GUaGCgCUGC- -5'
10570 5' -55.5 NC_002687.1 + 69440 0.69 0.933307
Target:  5'- uGGAucagacaGACAGcGCGUGCUCcgcuuUCGCaGGCGg -3'
miRNA:   3'- gCCU-------CUGUC-CGUACGAGu----AGCG-CUGC- -5'
10570 5' -55.5 NC_002687.1 + 55026 0.69 0.92385
Target:  5'- aCGGcuauGACGGGCAaGCcCGUCGUGAaCGa -3'
miRNA:   3'- -GCCu---CUGUCCGUaCGaGUAGCGCU-GC- -5'
10570 5' -55.5 NC_002687.1 + 57537 0.7 0.918559
Target:  5'- gCGaGGGACAGuCAcuacUGCUCAUCGCG-CGu -3'
miRNA:   3'- -GC-CUCUGUCcGU----ACGAGUAGCGCuGC- -5'
10570 5' -55.5 NC_002687.1 + 200977 0.7 0.918559
Target:  5'- gGGcAGGCGGGCGUGUUUaggucgGUCGUGAgGu -3'
miRNA:   3'- gCC-UCUGUCCGUACGAG------UAGCGCUgC- -5'
10570 5' -55.5 NC_002687.1 + 240078 0.7 0.918559
Target:  5'- aGGuGcCAGGCAUGUga--CGCGACGg -3'
miRNA:   3'- gCCuCuGUCCGUACGaguaGCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 108116 0.7 0.901402
Target:  5'- aCGGAGAauucgcGGCGUGCcaaGUCcGCGGCGg -3'
miRNA:   3'- -GCCUCUgu----CCGUACGag-UAG-CGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 30473 0.7 0.89526
Target:  5'- uGGAGACGGGUGUGCccUAUCGCu--- -3'
miRNA:   3'- gCCUCUGUCCGUACGa-GUAGCGcugc -5'
10570 5' -55.5 NC_002687.1 + 219052 0.71 0.868653
Target:  5'- gGGAGAaugcGGCGUGCUC--CGCGGCc -3'
miRNA:   3'- gCCUCUgu--CCGUACGAGuaGCGCUGc -5'
10570 5' -55.5 NC_002687.1 + 295866 0.71 0.868653
Target:  5'- aCGGuAGugGGGguUGC--GUCGCGGCGu -3'
miRNA:   3'- -GCC-UCugUCCguACGagUAGCGCUGC- -5'
10570 5' -55.5 NC_002687.1 + 297377 0.78 0.496836
Target:  5'- uCGGuGAUucGGcCAUGCUCAUCGCGACc -3'
miRNA:   3'- -GCCuCUGu-CC-GUACGAGUAGCGCUGc -5'
10570 5' -55.5 NC_002687.1 + 297426 1.08 0.008503
Target:  5'- cCGGAGACAGGCAUGCUCAUCGCGACGc -3'
miRNA:   3'- -GCCUCUGUCCGUACGAGUAGCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.