Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10571 | 3' | -55.4 | NC_002687.1 | + | 198326 | 0.66 | 0.985699 |
Target: 5'- --cUCGGCAuGGUGGCacaCGAAaGACUGa -3' miRNA: 3'- uccAGCCGUuCCACCG---GUUUgCUGAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 280949 | 0.69 | 0.916642 |
Target: 5'- cAGcGUCGGCGggggccuGGGUGGCgGcAGCGGCg- -3' miRNA: 3'- -UC-CAGCCGU-------UCCACCGgU-UUGCUGac -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 215167 | 0.69 | 0.937449 |
Target: 5'- uGGGUCaGCGAGGgcaUGGCCG--UGugUGg -3' miRNA: 3'- -UCCAGcCGUUCC---ACCGGUuuGCugAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 274643 | 0.69 | 0.937449 |
Target: 5'- uAGaGUCaGCAAGGU-GCCGGAUGACa- -3' miRNA: 3'- -UC-CAGcCGUUCCAcCGGUUUGCUGac -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 91992 | 0.68 | 0.946264 |
Target: 5'- uGGUCGGCGAgcucGGUGagacauCCAAAUGAUUGc -3' miRNA: 3'- uCCAGCCGUU----CCACc-----GGUUUGCUGAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 66038 | 0.68 | 0.954219 |
Target: 5'- gGGuGUCGGCAAGGUaauGGaaaccaCGAACGAUg- -3' miRNA: 3'- -UC-CAGCCGUUCCA---CCg-----GUUUGCUGac -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 249847 | 0.67 | 0.975694 |
Target: 5'- gGGGUCa-CGAGGUGGaCGAcucucgccACGACUGg -3' miRNA: 3'- -UCCAGccGUUCCACCgGUU--------UGCUGAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 25689 | 0.66 | 0.980174 |
Target: 5'- cAGGagGGUAAGGaGGCgcaaGAACGACg- -3' miRNA: 3'- -UCCagCCGUUCCaCCGg---UUUGCUGac -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 281167 | 0.66 | 0.980174 |
Target: 5'- aAGGUaGGCGuGGgGGCCGAgGCGGCg- -3' miRNA: 3'- -UCCAgCCGUuCCaCCGGUU-UGCUGac -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 37731 | 0.71 | 0.866345 |
Target: 5'- -cGUCGGCAaacauccccugGGGaacuuUGGCCGAcCGACUGg -3' miRNA: 3'- ucCAGCCGU-----------UCC-----ACCGGUUuGCUGAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 108407 | 0.71 | 0.851613 |
Target: 5'- gGGGcCGGaCGAGGUGGCaucggGAugGACUu -3' miRNA: 3'- -UCCaGCC-GUUCCACCGg----UUugCUGAc -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 299496 | 1.02 | 0.020259 |
Target: 5'- cAGGUCGGCAAGGUGGUCAAGCGGCUGu -3' miRNA: 3'- -UCCAGCCGUUCCACCGGUUUGCUGAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 331675 | 0.66 | 0.985699 |
Target: 5'- cAGuGUCGGUGucGGUGGCUccACGACc- -3' miRNA: 3'- -UC-CAGCCGUu-CCACCGGuuUGCUGac -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 226198 | 0.66 | 0.986799 |
Target: 5'- aAGGUCGuGCucaagccggacaggGGGGUGGCgUggGCGGCc- -3' miRNA: 3'- -UCCAGC-CG--------------UUCCACCG-GuuUGCUGac -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 258739 | 0.66 | 0.982168 |
Target: 5'- aAGGgagCGGUAAGG-GGauuaCCAAGCGAUUu -3' miRNA: 3'- -UCCa--GCCGUUCCaCC----GGUUUGCUGAc -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 297543 | 1.08 | 0.008451 |
Target: 5'- cAGGUCGGCAAGGUGGCCAAACGACUGu -3' miRNA: 3'- -UCCAGCCGUUCCACCGGUUUGCUGAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 307652 | 0.67 | 0.970517 |
Target: 5'- uGGGaUCGGCGGcGGUGGCgGugGugGuGCUGg -3' miRNA: 3'- -UCC-AGCCGUU-CCACCGgU--UugC-UGAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 104171 | 0.71 | 0.851613 |
Target: 5'- cGGUUGGCAAGaccgGGCCucgaGAACGACg- -3' miRNA: 3'- uCCAGCCGUUCca--CCGG----UUUGCUGac -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 305569 | 0.73 | 0.758947 |
Target: 5'- uGGGUCGcG-AAGGUGGUgGAAgGACUGg -3' miRNA: 3'- -UCCAGC-CgUUCCACCGgUUUgCUGAC- -5' |
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10571 | 3' | -55.4 | NC_002687.1 | + | 6489 | 0.67 | 0.975452 |
Target: 5'- ---aUGGCuaagcugGAGGUGGCCGAACGAg-- -3' miRNA: 3'- uccaGCCG-------UUCCACCGGUUUGCUgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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