miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10571 5' -56.1 NC_002687.1 + 239219 0.65 0.986256
Target:  5'- gGCCAACaCGggaACAUCUCGGCGugcucuguugagacGGGCu -3'
miRNA:   3'- -CGGUUG-GCac-UGUAGGGCUGC--------------UCCGu -5'
10571 5' -56.1 NC_002687.1 + 209872 0.66 0.98514
Target:  5'- uGCCuguggugcCCGUGGug-CCCGugGuGGCAg -3'
miRNA:   3'- -CGGuu------GGCACUguaGGGCugCuCCGU- -5'
10571 5' -56.1 NC_002687.1 + 225221 0.66 0.983428
Target:  5'- uGCCGACCGUGccggcGCcgCCgCGuCGGcGGCu -3'
miRNA:   3'- -CGGUUGGCAC-----UGuaGG-GCuGCU-CCGu -5'
10571 5' -56.1 NC_002687.1 + 97645 0.66 0.983428
Target:  5'- uGUCGGCgGUGACA--CCGACG-GGUg -3'
miRNA:   3'- -CGGUUGgCACUGUagGGCUGCuCCGu -5'
10571 5' -56.1 NC_002687.1 + 200413 0.66 0.983428
Target:  5'- cGCC-GCCG-GAUGUCCCGAUGccGUg -3'
miRNA:   3'- -CGGuUGGCaCUGUAGGGCUGCucCGu -5'
10571 5' -56.1 NC_002687.1 + 135447 0.66 0.981571
Target:  5'- uGCCGGCCaUGAU-UCCCGGCGuuGUc -3'
miRNA:   3'- -CGGUUGGcACUGuAGGGCUGCucCGu -5'
10571 5' -56.1 NC_002687.1 + 203680 0.66 0.981571
Target:  5'- gGCCGACUGUGuCGcCCCGGaagaagaguCGAacGGCAg -3'
miRNA:   3'- -CGGUUGGCACuGUaGGGCU---------GCU--CCGU- -5'
10571 5' -56.1 NC_002687.1 + 76106 0.66 0.981571
Target:  5'- -aCGACCGUGAagaagguacCGUCCUcaGACGGGGa- -3'
miRNA:   3'- cgGUUGGCACU---------GUAGGG--CUGCUCCgu -5'
10571 5' -56.1 NC_002687.1 + 241520 0.66 0.981571
Target:  5'- cGCCGccACCGuUGGCcaCCgCGGCGGGGUu -3'
miRNA:   3'- -CGGU--UGGC-ACUGuaGG-GCUGCUCCGu -5'
10571 5' -56.1 NC_002687.1 + 243745 0.66 0.977396
Target:  5'- uGCCGGCCGUaaGCGUCCCaacuACGAaguuugcccgGGCAc -3'
miRNA:   3'- -CGGUUGGCAc-UGUAGGGc---UGCU----------CCGU- -5'
10571 5' -56.1 NC_002687.1 + 151932 0.67 0.975065
Target:  5'- aGCCGACCcacGUGACucAUCUUuACGAGGUu -3'
miRNA:   3'- -CGGUUGG---CACUG--UAGGGcUGCUCCGu -5'
10571 5' -56.1 NC_002687.1 + 84352 0.67 0.975065
Target:  5'- cGCCGcaACCGUcaACGUCgCGACGAcGGUg -3'
miRNA:   3'- -CGGU--UGGCAc-UGUAGgGCUGCU-CCGu -5'
10571 5' -56.1 NC_002687.1 + 109419 0.67 0.972562
Target:  5'- cGCCAACagaagCGUGGCAUCCgcaaucaGAuCGGGGUc -3'
miRNA:   3'- -CGGUUG-----GCACUGUAGGg------CU-GCUCCGu -5'
10571 5' -56.1 NC_002687.1 + 233683 0.67 0.972562
Target:  5'- aGCCGACCGUGcucGCAgagaGuACGAGGUAg -3'
miRNA:   3'- -CGGUUGGCAC---UGUagggC-UGCUCCGU- -5'
10571 5' -56.1 NC_002687.1 + 71429 0.67 0.969884
Target:  5'- cGCCAcgucuuUCGUGAC-UCCCGAUGcaAGGUu -3'
miRNA:   3'- -CGGUu-----GGCACUGuAGGGCUGC--UCCGu -5'
10571 5' -56.1 NC_002687.1 + 25533 0.67 0.969884
Target:  5'- --gAACCGuUGGCAUCCagaauagagcgUGugGGGGCAg -3'
miRNA:   3'- cggUUGGC-ACUGUAGG-----------GCugCUCCGU- -5'
10571 5' -56.1 NC_002687.1 + 212316 0.67 0.969884
Target:  5'- uCCGGCuCGcUGGCAUCCuCGGCGucuucGGGCu -3'
miRNA:   3'- cGGUUG-GC-ACUGUAGG-GCUGC-----UCCGu -5'
10571 5' -56.1 NC_002687.1 + 205121 0.67 0.965828
Target:  5'- uGCCAACCacaugcacggcgauGUGACAUCCaccguagCGGCcgGAGGUg -3'
miRNA:   3'- -CGGUUGG--------------CACUGUAGG-------GCUG--CUCCGu -5'
10571 5' -56.1 NC_002687.1 + 247919 0.67 0.963977
Target:  5'- cGCCGGCUGUGuuuuGCAUCCCcggaGCG-GGUg -3'
miRNA:   3'- -CGGUUGGCAC----UGUAGGGc---UGCuCCGu -5'
10571 5' -56.1 NC_002687.1 + 292800 0.67 0.963661
Target:  5'- cGCCAACUggaagcgGUGGCggCCgCGGCGcacGGGCGa -3'
miRNA:   3'- -CGGUUGG-------CACUGuaGG-GCUGC---UCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.