Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10572 | 3' | -55.9 | NC_002687.1 | + | 114438 | 0.67 | 0.95905 |
Target: 5'- -uUUUUCGCauucaGCGCAgCAAGGUUugGg -3' miRNA: 3'- guGAGAGUGg----CGCGUgGUUCCAGugC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 298222 | 0.67 | 0.962406 |
Target: 5'- cUACUgUUCGCCGCaGcCACCGGGG-CACa -3' miRNA: 3'- -GUGA-GAGUGGCG-C-GUGGUUCCaGUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 312427 | 0.67 | 0.965567 |
Target: 5'- gGCgCUCACagcaCGCGCCAuGGUCAUGc -3' miRNA: 3'- gUGaGAGUGgc--GCGUGGUuCCAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 98292 | 0.66 | 0.978161 |
Target: 5'- cCACUCUCGCUGCaagguguGCACCGGuuuugguGGUUguACGu -3' miRNA: 3'- -GUGAGAGUGGCG-------CGUGGUU-------CCAG--UGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 325758 | 0.66 | 0.978599 |
Target: 5'- uGCUCUcCGCCGuUGCACCGAcagCGCGu -3' miRNA: 3'- gUGAGA-GUGGC-GCGUGGUUccaGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 21336 | 0.66 | 0.980691 |
Target: 5'- cCACUgUCAUCGgccaUGCGCUuuGGUCAUGu -3' miRNA: 3'- -GUGAgAGUGGC----GCGUGGuuCCAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 70051 | 0.66 | 0.982627 |
Target: 5'- aAUUUuaUCGCCGUGCACCGucguugucucgAGG-CACGu -3' miRNA: 3'- gUGAG--AGUGGCGCGUGGU-----------UCCaGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 329370 | 0.66 | 0.982627 |
Target: 5'- gGCUUUCACCGUGCcaAUCGAGGa---- -3' miRNA: 3'- gUGAGAGUGGCGCG--UGGUUCCagugc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 215464 | 0.66 | 0.982627 |
Target: 5'- uCGCUCUCGaaggUCGCGUAgCCcGGGUgCACa -3' miRNA: 3'- -GUGAGAGU----GGCGCGU-GGuUCCA-GUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 229850 | 0.66 | 0.984413 |
Target: 5'- aCGC-CUCACCGUGCuACCugcaUCGCGa -3' miRNA: 3'- -GUGaGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 297019 | 0.66 | 0.985898 |
Target: 5'- --gUCUCGCUGUGCGCCGAGauagagcaacgauGUgCGCGc -3' miRNA: 3'- gugAGAGUGGCGCGUGGUUC-------------CA-GUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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