miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10572 3' -55.9 NC_002687.1 + 21336 0.66 0.980691
Target:  5'- cCACUgUCAUCGgccaUGCGCUuuGGUCAUGu -3'
miRNA:   3'- -GUGAgAGUGGC----GCGUGGuuCCAGUGC- -5'
10572 3' -55.9 NC_002687.1 + 27947 0.76 0.583528
Target:  5'- aACUCUUACgGCGgACCAAGGaaggCACGa -3'
miRNA:   3'- gUGAGAGUGgCGCgUGGUUCCa---GUGC- -5'
10572 3' -55.9 NC_002687.1 + 70051 0.66 0.982627
Target:  5'- aAUUUuaUCGCCGUGCACCGucguugucucgAGG-CACGu -3'
miRNA:   3'- gUGAG--AGUGGCGCGUGGU-----------UCCaGUGC- -5'
10572 3' -55.9 NC_002687.1 + 80091 0.69 0.914024
Target:  5'- aCACUUUCAUCGa--GCCGGuGGUCACGu -3'
miRNA:   3'- -GUGAGAGUGGCgcgUGGUU-CCAGUGC- -5'
10572 3' -55.9 NC_002687.1 + 98292 0.66 0.978161
Target:  5'- cCACUCUCGCUGCaagguguGCACCGGuuuugguGGUUguACGu -3'
miRNA:   3'- -GUGAGAGUGGCG-------CGUGGUU-------CCAG--UGC- -5'
10572 3' -55.9 NC_002687.1 + 101436 0.68 0.955493
Target:  5'- gGCUCUCGCgGUcUGCCuuGGUCACa -3'
miRNA:   3'- gUGAGAGUGgCGcGUGGuuCCAGUGc -5'
10572 3' -55.9 NC_002687.1 + 106943 0.68 0.939196
Target:  5'- uCAUUCUa--CGCGCACCAcaaGGcGUCACa -3'
miRNA:   3'- -GUGAGAgugGCGCGUGGU---UC-CAGUGc -5'
10572 3' -55.9 NC_002687.1 + 114438 0.67 0.95905
Target:  5'- -uUUUUCGCauucaGCGCAgCAAGGUUugGg -3'
miRNA:   3'- guGAGAGUGg----CGCGUgGUUCCAGugC- -5'
10572 3' -55.9 NC_002687.1 + 145835 0.68 0.939196
Target:  5'- uGCUCgccgaGgCGCGCGCCGGGGcgCugGg -3'
miRNA:   3'- gUGAGag---UgGCGCGUGGUUCCa-GugC- -5'
10572 3' -55.9 NC_002687.1 + 153850 0.7 0.883533
Target:  5'- gACUCU--UCGUGCGCCAGGGgaaCACGc -3'
miRNA:   3'- gUGAGAguGGCGCGUGGUUCCa--GUGC- -5'
10572 3' -55.9 NC_002687.1 + 180332 0.71 0.862805
Target:  5'- cCACUCguaGCCGCGCGCCAacaaagAGGgaauaACGu -3'
miRNA:   3'- -GUGAGag-UGGCGCGUGGU------UCCag---UGC- -5'
10572 3' -55.9 NC_002687.1 + 180596 0.7 0.883533
Target:  5'- aGCUCUCACaaagGCGUGCgCGGGGUCGa- -3'
miRNA:   3'- gUGAGAGUGg---CGCGUG-GUUCCAGUgc -5'
10572 3' -55.9 NC_002687.1 + 182478 0.75 0.631972
Target:  5'- cCGCUUUCGCCaGCuGCGCUucGGGUCGCGa -3'
miRNA:   3'- -GUGAGAGUGG-CG-CGUGGu-UCCAGUGC- -5'
10572 3' -55.9 NC_002687.1 + 215464 0.66 0.982627
Target:  5'- uCGCUCUCGaaggUCGCGUAgCCcGGGUgCACa -3'
miRNA:   3'- -GUGAGAGU----GGCGCGU-GGuUCCA-GUGc -5'
10572 3' -55.9 NC_002687.1 + 229371 0.69 0.924223
Target:  5'- gCACgUCUCACCGUgcuaccuGCACCAcGuGUUACGu -3'
miRNA:   3'- -GUG-AGAGUGGCG-------CGUGGUuC-CAGUGC- -5'
10572 3' -55.9 NC_002687.1 + 229485 0.69 0.929773
Target:  5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3'
miRNA:   3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5'
10572 3' -55.9 NC_002687.1 + 229606 0.69 0.929773
Target:  5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3'
miRNA:   3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5'
10572 3' -55.9 NC_002687.1 + 229850 0.66 0.984413
Target:  5'- aCGC-CUCACCGUGCuACCugcaUCGCGa -3'
miRNA:   3'- -GUGaGAGUGGCGCG-UGGuuccAGUGC- -5'
10572 3' -55.9 NC_002687.1 + 230454 0.69 0.929773
Target:  5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3'
miRNA:   3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5'
10572 3' -55.9 NC_002687.1 + 230575 0.69 0.929773
Target:  5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3'
miRNA:   3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.