miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 96118 0.66 0.995472
Target:  5'- gUCGACGaUCGUCGUGGUguUUGuUGGCg -3'
miRNA:   3'- -GGUUGC-AGUAGCGCCGguGGCuACUG- -5'
10573 3' -54.5 NC_002687.1 + 255152 0.66 0.995472
Target:  5'- gCGugGUCAaCgGgGGCCGCCGcguUGAUc -3'
miRNA:   3'- gGUugCAGUaG-CgCCGGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 279062 0.66 0.995407
Target:  5'- aCCAGCGgccUCAaacUCGCcGCCAUCGGcugugucUGGCg -3'
miRNA:   3'- -GGUUGC---AGU---AGCGcCGGUGGCU-------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 180653 0.66 0.995407
Target:  5'- aCCGugGUCAUCGaaggacuCGGUCuGCuCGAaGACg -3'
miRNA:   3'- -GGUugCAGUAGC-------GCCGG-UG-GCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 139351 0.66 0.994787
Target:  5'- aCAugGUagagGUCGCGGUagacgggGCCGAUGGu -3'
miRNA:   3'- gGUugCAg---UAGCGCCGg------UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 196625 0.66 0.994787
Target:  5'- aCCGugaGCGUCGgauuucggGCGGCaacgACCGAUGAg -3'
miRNA:   3'- -GGU---UGCAGUag------CGCCGg---UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 222216 0.66 0.994787
Target:  5'- aCCGugaGCGUCGgauuucggGCGGCaacgACCGAUGAg -3'
miRNA:   3'- -GGU---UGCAGUag------CGCCGg---UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 143163 0.66 0.994787
Target:  5'- aCGAUGaCAUCGacaggucaaGGUUGCUGAUGACa -3'
miRNA:   3'- gGUUGCaGUAGCg--------CCGGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 10726 0.66 0.994787
Target:  5'- aCCccCGUCGcCGCaGCCACUccgccuucgGAUGACa -3'
miRNA:   3'- -GGuuGCAGUaGCGcCGGUGG---------CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 40936 0.66 0.994338
Target:  5'- gCGcACGUC-UCGCGGCCcgcaauucguccgacGCCGcucUGGCg -3'
miRNA:   3'- gGU-UGCAGuAGCGCCGG---------------UGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 126550 0.66 0.994021
Target:  5'- gCgGGCGUCuGUCGCG---ACCGGUGGCg -3'
miRNA:   3'- -GgUUGCAG-UAGCGCcggUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 121756 0.66 0.994021
Target:  5'- cCCGACGUUuccagGUCGUaggagcagauGGUCAUCGGUGGu -3'
miRNA:   3'- -GGUUGCAG-----UAGCG----------CCGGUGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 79875 0.66 0.994021
Target:  5'- aCAACGUCgGUUGUaGaGCCuuCGGUGACg -3'
miRNA:   3'- gGUUGCAG-UAGCG-C-CGGugGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 99544 0.66 0.994021
Target:  5'- -aGGCgGUCGUCGCGGCgcuCGCgCGAUcGAUa -3'
miRNA:   3'- ggUUG-CAGUAGCGCCG---GUG-GCUA-CUG- -5'
10573 3' -54.5 NC_002687.1 + 277507 0.66 0.99394
Target:  5'- cCCcGCGcgcugccUCGUCgGCGGCCAUCGGacGACc -3'
miRNA:   3'- -GGuUGC-------AGUAG-CGCCGGUGGCUa-CUG- -5'
10573 3' -54.5 NC_002687.1 + 256034 0.66 0.99352
Target:  5'- gCCAuCGUCGUCGCuaCCACCGucaucaccacacgGACu -3'
miRNA:   3'- -GGUuGCAGUAGCGccGGUGGCua-----------CUG- -5'
10573 3' -54.5 NC_002687.1 + 205002 0.66 0.993167
Target:  5'- aCCAAUGaCAccgcccgCGCuGUCACCGGUGAUu -3'
miRNA:   3'- -GGUUGCaGUa------GCGcCGGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 263177 0.66 0.993167
Target:  5'- gCGGCGUCGUcCGCGGCUugUGu---- -3'
miRNA:   3'- gGUUGCAGUA-GCGCCGGugGCuacug -5'
10573 3' -54.5 NC_002687.1 + 45012 0.66 0.993167
Target:  5'- aCAucuCGUCGUCcugGCuGCCACCGGaGAUg -3'
miRNA:   3'- gGUu--GCAGUAG---CGcCGGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 291686 0.66 0.992609
Target:  5'- gCAGCG-CAgcagcuacgacagccUCGCGGCCGCUG--GGCa -3'
miRNA:   3'- gGUUGCaGU---------------AGCGCCGGUGGCuaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.