Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 215350 | 0.67 | 0.987333 |
Target: 5'- aCGAUGUCGcCGCccucGGCCccGCCGGUGuCg -3' miRNA: 3'- gGUUGCAGUaGCG----CCGG--UGGCUACuG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 129913 | 0.67 | 0.987908 |
Target: 5'- aCGACGaaagguuuggugguaUCAccCGCaGGCCuCCGGUGACa -3' miRNA: 3'- gGUUGC---------------AGUa-GCG-CCGGuGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 279020 | 0.67 | 0.988732 |
Target: 5'- uCCAGCGUCAgcugcauCGGUcccaacugcuuCACUGGUGACa -3' miRNA: 3'- -GGUUGCAGUagc----GCCG-----------GUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 182452 | 0.67 | 0.985804 |
Target: 5'- aCCuuggguACGUCGUaGCGGgcgcgaCCGCCGAgGACa -3' miRNA: 3'- -GGu-----UGCAGUAgCGCC------GGUGGCUaCUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 109039 | 0.68 | 0.975961 |
Target: 5'- gUCGGCGgaagCAUCgGCGcugaCGCCGAUGGCg -3' miRNA: 3'- -GGUUGCa---GUAG-CGCcg--GUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 292987 | 0.68 | 0.973506 |
Target: 5'- -aGACGaaaUCAgcugCGCGcGCUcuGCCGAUGACa -3' miRNA: 3'- ggUUGC---AGUa---GCGC-CGG--UGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 55212 | 0.68 | 0.970874 |
Target: 5'- gCCAAgGcCAUCGacuacuguucguCGGCCGCC-AUGGCa -3' miRNA: 3'- -GGUUgCaGUAGC------------GCCGGUGGcUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 38697 | 0.68 | 0.980365 |
Target: 5'- gCuACGUCAccCGUGGUagCAUCGAUGGCa -3' miRNA: 3'- gGuUGCAGUa-GCGCCG--GUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 212028 | 0.68 | 0.970874 |
Target: 5'- uCCAGCacaguuuuGUCAUcCGCGGCCACCu----- -3' miRNA: 3'- -GGUUG--------CAGUA-GCGCCGGUGGcuacug -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 312750 | 0.68 | 0.982327 |
Target: 5'- aCCAACGcgaGUCGauauGGCCGCCGucgcgGAUa -3' miRNA: 3'- -GGUUGCag-UAGCg---CCGGUGGCua---CUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 251067 | 0.68 | 0.980365 |
Target: 5'- gCUGACaGUCGUUGCuuucGGCCGCCGGguuucuuugcgGACa -3' miRNA: 3'- -GGUUG-CAGUAGCG----CCGGUGGCUa----------CUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 263184 | 0.68 | 0.975961 |
Target: 5'- -gAugGUCucGUUGCGGCgGCaGGUGACg -3' miRNA: 3'- ggUugCAG--UAGCGCCGgUGgCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 38871 | 0.68 | 0.975961 |
Target: 5'- ----gGUUAUCGaGGgCACCGGUGGCg -3' miRNA: 3'- gguugCAGUAGCgCCgGUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 57496 | 0.68 | 0.982327 |
Target: 5'- cUCAugGcCAUCaGC-GCCGCCGAUGcaGCa -3' miRNA: 3'- -GGUugCaGUAG-CGcCGGUGGCUAC--UG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 110673 | 0.68 | 0.970874 |
Target: 5'- gCCAACGUCAcccagCGCGGCCuuguACaCGAUu-- -3' miRNA: 3'- -GGUUGCAGUa----GCGCCGG----UG-GCUAcug -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 239118 | 0.68 | 0.975961 |
Target: 5'- aUCAugGUCucuUCGCucGGUgACCaGAUGGCg -3' miRNA: 3'- -GGUugCAGu--AGCG--CCGgUGG-CUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 134829 | 0.68 | 0.975961 |
Target: 5'- uCCGAUGUCgAUCGaGGCaCACCGGUa-- -3' miRNA: 3'- -GGUUGCAG-UAGCgCCG-GUGGCUAcug -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 141599 | 0.69 | 0.958471 |
Target: 5'- -gGACGUCGaCGCGGCCGugcuCCGcgGcACg -3' miRNA: 3'- ggUUGCAGUaGCGCCGGU----GGCuaC-UG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 57122 | 0.69 | 0.96806 |
Target: 5'- gUCAACGggaugcugCAUCgGCGG-CGCUGAUGGCc -3' miRNA: 3'- -GGUUGCa-------GUAG-CGCCgGUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 263015 | 0.69 | 0.954507 |
Target: 5'- gCGACGUCGUUGuUGGUgGCCGGgaguuucUGGCa -3' miRNA: 3'- gGUUGCAGUAGC-GCCGgUGGCU-------ACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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