Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 279784 | 0.73 | 0.861511 |
Target: 5'- aCAACGUCAUcaCGUGGUUACCccgacaGGUGGCa -3' miRNA: 3'- gGUUGCAGUA--GCGCCGGUGG------CUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 304196 | 0.74 | 0.814935 |
Target: 5'- cCCGcuGCuGUCAUCgGUGGCCG-CGAUGACg -3' miRNA: 3'- -GGU--UG-CAGUAG-CGCCGGUgGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 111321 | 0.74 | 0.814935 |
Target: 5'- aCggUGUCAacaUCGCGGCCaucACCGAUGuuuCg -3' miRNA: 3'- gGuuGCAGU---AGCGCCGG---UGGCUACu--G- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 114081 | 0.75 | 0.753919 |
Target: 5'- gCAGCGguaAUCGCGGUCGCCGucguggugGUGGCu -3' miRNA: 3'- gGUUGCag-UAGCGCCGGUGGC--------UACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 109950 | 0.78 | 0.599948 |
Target: 5'- gCAACGUaaugcgagggcucUAUUGCGGCaCACCGGUGGCc -3' miRNA: 3'- gGUUGCA-------------GUAGCGCCG-GUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 122664 | 0.79 | 0.533935 |
Target: 5'- cUCGugGaaAUCGCGGCCGCCG-UGACu -3' miRNA: 3'- -GGUugCagUAGCGCCGGUGGCuACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 303826 | 1.13 | 0.006038 |
Target: 5'- aCCAACGUCAUCGCGGCCACCGAUGACa -3' miRNA: 3'- -GGUUGCAGUAGCGCCGGUGGCUACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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