miRNA display CGI


Results 81 - 87 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 279784 0.73 0.861511
Target:  5'- aCAACGUCAUcaCGUGGUUACCccgacaGGUGGCa -3'
miRNA:   3'- gGUUGCAGUA--GCGCCGGUGG------CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 304196 0.74 0.814935
Target:  5'- cCCGcuGCuGUCAUCgGUGGCCG-CGAUGACg -3'
miRNA:   3'- -GGU--UG-CAGUAG-CGCCGGUgGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 111321 0.74 0.814935
Target:  5'- aCggUGUCAacaUCGCGGCCaucACCGAUGuuuCg -3'
miRNA:   3'- gGuuGCAGU---AGCGCCGG---UGGCUACu--G- -5'
10573 3' -54.5 NC_002687.1 + 114081 0.75 0.753919
Target:  5'- gCAGCGguaAUCGCGGUCGCCGucguggugGUGGCu -3'
miRNA:   3'- gGUUGCag-UAGCGCCGGUGGC--------UACUG- -5'
10573 3' -54.5 NC_002687.1 + 109950 0.78 0.599948
Target:  5'- gCAACGUaaugcgagggcucUAUUGCGGCaCACCGGUGGCc -3'
miRNA:   3'- gGUUGCA-------------GUAGCGCCG-GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 122664 0.79 0.533935
Target:  5'- cUCGugGaaAUCGCGGCCGCCG-UGACu -3'
miRNA:   3'- -GGUugCagUAGCGCCGGUGGCuACUG- -5'
10573 3' -54.5 NC_002687.1 + 303826 1.13 0.006038
Target:  5'- aCCAACGUCAUCGCGGCCACCGAUGACa -3'
miRNA:   3'- -GGUUGCAGUAGCGCCGGUGGCUACUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.