miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 203667 0.7 0.947074
Target:  5'- aCAGCGUgAUCGUGGCCgACUG-UGuCg -3'
miRNA:   3'- gGUUGCAgUAGCGCCGG-UGGCuACuG- -5'
10573 3' -54.5 NC_002687.1 + 21134 0.7 0.938427
Target:  5'- gCGAcCGUCGUUGgGGCUACgGAaguUGACa -3'
miRNA:   3'- gGUU-GCAGUAGCgCCGGUGgCU---ACUG- -5'
10573 3' -54.5 NC_002687.1 + 263015 0.69 0.954507
Target:  5'- gCGACGUCGUUGuUGGUgGCCGGgaguuucUGGCa -3'
miRNA:   3'- gGUUGCAGUAGC-GCCGgUGGCU-------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 57122 0.69 0.96806
Target:  5'- gUCAACGggaugcugCAUCgGCGG-CGCUGAUGGCc -3'
miRNA:   3'- -GGUUGCa-------GUAG-CGCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 2856 0.69 0.96806
Target:  5'- gCGGCgGUC-UCGaGGgCGCCGAUGGCg -3'
miRNA:   3'- gGUUG-CAGuAGCgCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 243785 0.69 0.958471
Target:  5'- aCCAcCuUUAUCGUGGUgcucgauggcugCGCCGAUGACa -3'
miRNA:   3'- -GGUuGcAGUAGCGCCG------------GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 272264 0.69 0.961863
Target:  5'- gCCGGCGUCAUCGaCGGUCA--GggGAUa -3'
miRNA:   3'- -GGUUGCAGUAGC-GCCGGUggCuaCUG- -5'
10573 3' -54.5 NC_002687.1 + 141599 0.69 0.958471
Target:  5'- -gGACGUCGaCGCGGCCGugcuCCGcgGcACg -3'
miRNA:   3'- ggUUGCAGUaGCGCCGGU----GGCuaC-UG- -5'
10573 3' -54.5 NC_002687.1 + 203346 0.69 0.965058
Target:  5'- -uGAUGUCGUCGUGaGUCACCGugGUGGa -3'
miRNA:   3'- ggUUGCAGUAGCGC-CGGUGGC--UACUg -5'
10573 3' -54.5 NC_002687.1 + 239039 0.69 0.96806
Target:  5'- gCAGCGUCG--GUGGCCcACCGAacgauccgcaUGGCg -3'
miRNA:   3'- gGUUGCAGUagCGCCGG-UGGCU----------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 109039 0.68 0.975961
Target:  5'- gUCGGCGgaagCAUCgGCGcugaCGCCGAUGGCg -3'
miRNA:   3'- -GGUUGCa---GUAG-CGCcg--GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 212028 0.68 0.970874
Target:  5'- uCCAGCacaguuuuGUCAUcCGCGGCCACCu----- -3'
miRNA:   3'- -GGUUG--------CAGUA-GCGCCGGUGGcuacug -5'
10573 3' -54.5 NC_002687.1 + 57496 0.68 0.982327
Target:  5'- cUCAugGcCAUCaGC-GCCGCCGAUGcaGCa -3'
miRNA:   3'- -GGUugCaGUAG-CGcCGGUGGCUAC--UG- -5'
10573 3' -54.5 NC_002687.1 + 251067 0.68 0.980365
Target:  5'- gCUGACaGUCGUUGCuuucGGCCGCCGGguuucuuugcgGACa -3'
miRNA:   3'- -GGUUG-CAGUAGCG----CCGGUGGCUa----------CUG- -5'
10573 3' -54.5 NC_002687.1 + 38871 0.68 0.975961
Target:  5'- ----gGUUAUCGaGGgCACCGGUGGCg -3'
miRNA:   3'- gguugCAGUAGCgCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 239118 0.68 0.975961
Target:  5'- aUCAugGUCucuUCGCucGGUgACCaGAUGGCg -3'
miRNA:   3'- -GGUugCAGu--AGCG--CCGgUGG-CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 263184 0.68 0.975961
Target:  5'- -gAugGUCucGUUGCGGCgGCaGGUGACg -3'
miRNA:   3'- ggUugCAG--UAGCGCCGgUGgCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 110673 0.68 0.970874
Target:  5'- gCCAACGUCAcccagCGCGGCCuuguACaCGAUu-- -3'
miRNA:   3'- -GGUUGCAGUa----GCGCCGG----UG-GCUAcug -5'
10573 3' -54.5 NC_002687.1 + 55212 0.68 0.970874
Target:  5'- gCCAAgGcCAUCGacuacuguucguCGGCCGCC-AUGGCa -3'
miRNA:   3'- -GGUUgCaGUAGC------------GCCGGUGGcUACUG- -5'
10573 3' -54.5 NC_002687.1 + 292987 0.68 0.973506
Target:  5'- -aGACGaaaUCAgcugCGCGcGCUcuGCCGAUGACa -3'
miRNA:   3'- ggUUGC---AGUa---GCGC-CGG--UGGCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.