miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 251067 0.68 0.980365
Target:  5'- gCUGACaGUCGUUGCuuucGGCCGCCGGguuucuuugcgGACa -3'
miRNA:   3'- -GGUUG-CAGUAGCG----CCGGUGGCUa----------CUG- -5'
10573 3' -54.5 NC_002687.1 + 312750 0.68 0.982327
Target:  5'- aCCAACGcgaGUCGauauGGCCGCCGucgcgGAUa -3'
miRNA:   3'- -GGUUGCag-UAGCg---CCGGUGGCua---CUG- -5'
10573 3' -54.5 NC_002687.1 + 57496 0.68 0.982327
Target:  5'- cUCAugGcCAUCaGC-GCCGCCGAUGcaGCa -3'
miRNA:   3'- -GGUugCaGUAG-CGcCGGUGGCUAC--UG- -5'
10573 3' -54.5 NC_002687.1 + 182452 0.67 0.985804
Target:  5'- aCCuuggguACGUCGUaGCGGgcgcgaCCGCCGAgGACa -3'
miRNA:   3'- -GGu-----UGCAGUAgCGCC------GGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 145306 0.67 0.985804
Target:  5'- -gAGCGUUGUgaacggCGCGGgCACCGAggUGGCu -3'
miRNA:   3'- ggUUGCAGUA------GCGCCgGUGGCU--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 8870 0.67 0.985804
Target:  5'- -aAGCGUUcgCgGCGGaCCGCCGuacUGACu -3'
miRNA:   3'- ggUUGCAGuaG-CGCC-GGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 277132 0.67 0.985804
Target:  5'- gCCGG-GUCGUcCGaUGGCCGCCGAcgaGGCa -3'
miRNA:   3'- -GGUUgCAGUA-GC-GCCGGUGGCUa--CUG- -5'
10573 3' -54.5 NC_002687.1 + 107261 0.67 0.985804
Target:  5'- uCCAAaguCGUCAUUGCGGCgGCCu----- -3'
miRNA:   3'- -GGUU---GCAGUAGCGCCGgUGGcuacug -5'
10573 3' -54.5 NC_002687.1 + 155120 0.67 0.987186
Target:  5'- aCGAUGUCGUCagagguacuaaugGCGuaCGCCGAcGACg -3'
miRNA:   3'- gGUUGCAGUAG-------------CGCcgGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 215350 0.67 0.987333
Target:  5'- aCGAUGUCGcCGCccucGGCCccGCCGGUGuCg -3'
miRNA:   3'- gGUUGCAGUaGCG----CCGG--UGGCUACuG- -5'
10573 3' -54.5 NC_002687.1 + 239539 0.67 0.987333
Target:  5'- ---gUGUUgaUGCGGgCGCCGGUGACg -3'
miRNA:   3'- gguuGCAGuaGCGCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 129913 0.67 0.987908
Target:  5'- aCGACGaaagguuuggugguaUCAccCGCaGGCCuCCGGUGACa -3'
miRNA:   3'- gGUUGC---------------AGUa-GCG-CCGGuGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 3217 0.67 0.988462
Target:  5'- uCCGACGUCGgcacCGGCCcuaaugagugcuCUGGUGACg -3'
miRNA:   3'- -GGUUGCAGUagc-GCCGGu-----------GGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 227602 0.67 0.988732
Target:  5'- aUCAGCucauccUCAUcCGCGGCUACCGuccGACc -3'
miRNA:   3'- -GGUUGc-----AGUA-GCGCCGGUGGCua-CUG- -5'
10573 3' -54.5 NC_002687.1 + 1671 0.67 0.988732
Target:  5'- -uGACGUUGUCGCuuGGUauuUCGAUGACg -3'
miRNA:   3'- ggUUGCAGUAGCG--CCGgu-GGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 113087 0.67 0.988732
Target:  5'- -aAACGcCGUCGCGuuCAgCGGUGGCu -3'
miRNA:   3'- ggUUGCaGUAGCGCcgGUgGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 279020 0.67 0.988732
Target:  5'- uCCAGCGUCAgcugcauCGGUcccaacugcuuCACUGGUGACa -3'
miRNA:   3'- -GGUUGCAGUagc----GCCG-----------GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 169794 0.67 0.990007
Target:  5'- uCCAcCGU-GUCGUGGCCgacGCCGAcgucGACa -3'
miRNA:   3'- -GGUuGCAgUAGCGCCGG---UGGCUa---CUG- -5'
10573 3' -54.5 NC_002687.1 + 212333 0.67 0.990007
Target:  5'- cUCGGCGUCuUCGgGcucGCCACCGucGACa -3'
miRNA:   3'- -GGUUGCAGuAGCgC---CGGUGGCuaCUG- -5'
10573 3' -54.5 NC_002687.1 + 95770 0.66 0.990716
Target:  5'- aCGACGaUCGUCGacaauuuccaguaGGCCAUCGcgGAa -3'
miRNA:   3'- gGUUGC-AGUAGCg------------CCGGUGGCuaCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.