Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 308829 | 0.66 | 0.992218 |
Target: 5'- uCCGcCGcagCAUCGauGCCACCGGaGGCc -3' miRNA: 3'- -GGUuGCa--GUAGCgcCGGUGGCUaCUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 9545 | 0.66 | 0.992218 |
Target: 5'- uCCGGCGUCAgugUGagaGGCCcCCGuccaGACg -3' miRNA: 3'- -GGUUGCAGUa--GCg--CCGGuGGCua--CUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 103085 | 0.66 | 0.99181 |
Target: 5'- gCCGAUGUCGacgccgggaacaaCGCGGgUGCCGAcGACa -3' miRNA: 3'- -GGUUGCAGUa------------GCGCCgGUGGCUaCUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 307737 | 0.66 | 0.991167 |
Target: 5'- gCCAugGcCAUCGgcgaGGgCGCCGAcagcgauggUGACg -3' miRNA: 3'- -GGUugCaGUAGCg---CCgGUGGCU---------ACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 206975 | 0.66 | 0.991167 |
Target: 5'- gUAAUGUUuUCGUGGUCGUCGAUGAg -3' miRNA: 3'- gGUUGCAGuAGCGCCGGUGGCUACUg -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 316111 | 0.66 | 0.991167 |
Target: 5'- gCAGC-UCAUUGgGGCCaACCGGUcGCu -3' miRNA: 3'- gGUUGcAGUAGCgCCGG-UGGCUAcUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 112052 | 0.66 | 0.991167 |
Target: 5'- uUCAAugcCGUCGUCGauGCCAUUGGccuUGACa -3' miRNA: 3'- -GGUU---GCAGUAGCgcCGGUGGCU---ACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 95770 | 0.66 | 0.990716 |
Target: 5'- aCGACGaUCGUCGacaauuuccaguaGGCCAUCGcgGAa -3' miRNA: 3'- gGUUGC-AGUAGCg------------CCGGUGGCuaCUg -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 212333 | 0.67 | 0.990007 |
Target: 5'- cUCGGCGUCuUCGgGcucGCCACCGucGACa -3' miRNA: 3'- -GGUUGCAGuAGCgC---CGGUGGCuaCUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 169794 | 0.67 | 0.990007 |
Target: 5'- uCCAcCGU-GUCGUGGCCgacGCCGAcgucGACa -3' miRNA: 3'- -GGUuGCAgUAGCGCCGG---UGGCUa---CUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 227602 | 0.67 | 0.988732 |
Target: 5'- aUCAGCucauccUCAUcCGCGGCUACCGuccGACc -3' miRNA: 3'- -GGUUGc-----AGUA-GCGCCGGUGGCua-CUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 113087 | 0.67 | 0.988732 |
Target: 5'- -aAACGcCGUCGCGuuCAgCGGUGGCu -3' miRNA: 3'- ggUUGCaGUAGCGCcgGUgGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 1671 | 0.67 | 0.988732 |
Target: 5'- -uGACGUUGUCGCuuGGUauuUCGAUGACg -3' miRNA: 3'- ggUUGCAGUAGCG--CCGgu-GGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 279020 | 0.67 | 0.988732 |
Target: 5'- uCCAGCGUCAgcugcauCGGUcccaacugcuuCACUGGUGACa -3' miRNA: 3'- -GGUUGCAGUagc----GCCG-----------GUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 3217 | 0.67 | 0.988462 |
Target: 5'- uCCGACGUCGgcacCGGCCcuaaugagugcuCUGGUGACg -3' miRNA: 3'- -GGUUGCAGUagc-GCCGGu-----------GGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 129913 | 0.67 | 0.987908 |
Target: 5'- aCGACGaaagguuuggugguaUCAccCGCaGGCCuCCGGUGACa -3' miRNA: 3'- gGUUGC---------------AGUa-GCG-CCGGuGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 239539 | 0.67 | 0.987333 |
Target: 5'- ---gUGUUgaUGCGGgCGCCGGUGACg -3' miRNA: 3'- gguuGCAGuaGCGCCgGUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 215350 | 0.67 | 0.987333 |
Target: 5'- aCGAUGUCGcCGCccucGGCCccGCCGGUGuCg -3' miRNA: 3'- gGUUGCAGUaGCG----CCGG--UGGCUACuG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 155120 | 0.67 | 0.987186 |
Target: 5'- aCGAUGUCGUCagagguacuaaugGCGuaCGCCGAcGACg -3' miRNA: 3'- gGUUGCAGUAG-------------CGCcgGUGGCUaCUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 8870 | 0.67 | 0.985804 |
Target: 5'- -aAGCGUUcgCgGCGGaCCGCCGuacUGACu -3' miRNA: 3'- ggUUGCAGuaG-CGCC-GGUGGCu--ACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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