miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 1671 0.67 0.988732
Target:  5'- -uGACGUUGUCGCuuGGUauuUCGAUGACg -3'
miRNA:   3'- ggUUGCAGUAGCG--CCGgu-GGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 2856 0.69 0.96806
Target:  5'- gCGGCgGUC-UCGaGGgCGCCGAUGGCg -3'
miRNA:   3'- gGUUG-CAGuAGCgCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 3217 0.67 0.988462
Target:  5'- uCCGACGUCGgcacCGGCCcuaaugagugcuCUGGUGACg -3'
miRNA:   3'- -GGUUGCAGUagc-GCCGGu-----------GGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 8870 0.67 0.985804
Target:  5'- -aAGCGUUcgCgGCGGaCCGCCGuacUGACu -3'
miRNA:   3'- ggUUGCAGuaG-CGCC-GGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 9545 0.66 0.992218
Target:  5'- uCCGGCGUCAgugUGagaGGCCcCCGuccaGACg -3'
miRNA:   3'- -GGUUGCAGUa--GCg--CCGGuGGCua--CUG- -5'
10573 3' -54.5 NC_002687.1 + 10726 0.66 0.994787
Target:  5'- aCCccCGUCGcCGCaGCCACUccgccuucgGAUGACa -3'
miRNA:   3'- -GGuuGCAGUaGCGcCGGUGG---------CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 21134 0.7 0.938427
Target:  5'- gCGAcCGUCGUUGgGGCUACgGAaguUGACa -3'
miRNA:   3'- gGUU-GCAGUAGCgCCGGUGgCU---ACUG- -5'
10573 3' -54.5 NC_002687.1 + 38302 0.71 0.92385
Target:  5'- uCCAugGUUAUCGUGGCCcuACagGAagGACa -3'
miRNA:   3'- -GGUugCAGUAGCGCCGG--UGg-CUa-CUG- -5'
10573 3' -54.5 NC_002687.1 + 38697 0.68 0.980365
Target:  5'- gCuACGUCAccCGUGGUagCAUCGAUGGCa -3'
miRNA:   3'- gGuUGCAGUa-GCGCCG--GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 38871 0.68 0.975961
Target:  5'- ----gGUUAUCGaGGgCACCGGUGGCg -3'
miRNA:   3'- gguugCAGUAGCgCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 40936 0.66 0.994338
Target:  5'- gCGcACGUC-UCGCGGCCcgcaauucguccgacGCCGcucUGGCg -3'
miRNA:   3'- gGU-UGCAGuAGCGCCGG---------------UGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 45012 0.66 0.993167
Target:  5'- aCAucuCGUCGUCcugGCuGCCACCGGaGAUg -3'
miRNA:   3'- gGUu--GCAGUAG---CGcCGGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 55212 0.68 0.970874
Target:  5'- gCCAAgGcCAUCGacuacuguucguCGGCCGCC-AUGGCa -3'
miRNA:   3'- -GGUUgCaGUAGC------------GCCGGUGGcUACUG- -5'
10573 3' -54.5 NC_002687.1 + 57122 0.69 0.96806
Target:  5'- gUCAACGggaugcugCAUCgGCGG-CGCUGAUGGCc -3'
miRNA:   3'- -GGUUGCa-------GUAG-CGCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 57496 0.68 0.982327
Target:  5'- cUCAugGcCAUCaGC-GCCGCCGAUGcaGCa -3'
miRNA:   3'- -GGUugCaGUAG-CGcCGGUGGCUAC--UG- -5'
10573 3' -54.5 NC_002687.1 + 79875 0.66 0.994021
Target:  5'- aCAACGUCgGUUGUaGaGCCuuCGGUGACg -3'
miRNA:   3'- gGUUGCAG-UAGCG-C-CGGugGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 95770 0.66 0.990716
Target:  5'- aCGACGaUCGUCGacaauuuccaguaGGCCAUCGcgGAa -3'
miRNA:   3'- gGUUGC-AGUAGCg------------CCGGUGGCuaCUg -5'
10573 3' -54.5 NC_002687.1 + 96118 0.66 0.995472
Target:  5'- gUCGACGaUCGUCGUGGUguUUGuUGGCg -3'
miRNA:   3'- -GGUUGC-AGUAGCGCCGguGGCuACUG- -5'
10573 3' -54.5 NC_002687.1 + 99544 0.66 0.994021
Target:  5'- -aGGCgGUCGUCGCGGCgcuCGCgCGAUcGAUa -3'
miRNA:   3'- ggUUG-CAGUAGCGCCG---GUG-GCUA-CUG- -5'
10573 3' -54.5 NC_002687.1 + 103085 0.66 0.99181
Target:  5'- gCCGAUGUCGacgccgggaacaaCGCGGgUGCCGAcGACa -3'
miRNA:   3'- -GGUUGCAGUa------------GCGCCgGUGGCUaCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.