miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 239039 0.69 0.96806
Target:  5'- gCAGCGUCG--GUGGCCcACCGAacgauccgcaUGGCg -3'
miRNA:   3'- gGUUGCAGUagCGCCGG-UGGCU----------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 239118 0.68 0.975961
Target:  5'- aUCAugGUCucuUCGCucGGUgACCaGAUGGCg -3'
miRNA:   3'- -GGUugCAGu--AGCG--CCGgUGG-CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 239539 0.67 0.987333
Target:  5'- ---gUGUUgaUGCGGgCGCCGGUGACg -3'
miRNA:   3'- gguuGCAGuaGCGCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 243785 0.69 0.958471
Target:  5'- aCCAcCuUUAUCGUGGUgcucgauggcugCGCCGAUGACa -3'
miRNA:   3'- -GGUuGcAGUAGCGCCG------------GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 251067 0.68 0.980365
Target:  5'- gCUGACaGUCGUUGCuuucGGCCGCCGGguuucuuugcgGACa -3'
miRNA:   3'- -GGUUG-CAGUAGCG----CCGGUGGCUa----------CUG- -5'
10573 3' -54.5 NC_002687.1 + 254641 0.73 0.838986
Target:  5'- uCCGGCGUCAcgCGUGGCUGCUGc-GACa -3'
miRNA:   3'- -GGUUGCAGUa-GCGCCGGUGGCuaCUG- -5'
10573 3' -54.5 NC_002687.1 + 255152 0.66 0.995472
Target:  5'- gCGugGUCAaCgGgGGCCGCCGcguUGAUc -3'
miRNA:   3'- gGUugCAGUaG-CgCCGGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 255783 0.73 0.838986
Target:  5'- -gAGCGaaaaCAUCGCGGCCGCUGG-GGCu -3'
miRNA:   3'- ggUUGCa---GUAGCGCCGGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 256034 0.66 0.99352
Target:  5'- gCCAuCGUCGUCGCuaCCACCGucaucaccacacgGACu -3'
miRNA:   3'- -GGUuGCAGUAGCGccGGUGGCua-----------CUG- -5'
10573 3' -54.5 NC_002687.1 + 262668 0.73 0.854182
Target:  5'- aCAACGaCGUCGCGGCC-CUGcacgggucGUGGCg -3'
miRNA:   3'- gGUUGCaGUAGCGCCGGuGGC--------UACUG- -5'
10573 3' -54.5 NC_002687.1 + 263015 0.69 0.954507
Target:  5'- gCGACGUCGUUGuUGGUgGCCGGgaguuucUGGCa -3'
miRNA:   3'- gGUUGCAGUAGC-GCCGgUGGCU-------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 263177 0.66 0.993167
Target:  5'- gCGGCGUCGUcCGCGGCUugUGu---- -3'
miRNA:   3'- gGUUGCAGUA-GCGCCGGugGCuacug -5'
10573 3' -54.5 NC_002687.1 + 263184 0.68 0.975961
Target:  5'- -gAugGUCucGUUGCGGCgGCaGGUGACg -3'
miRNA:   3'- ggUugCAG--UAGCGCCGgUGgCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 272264 0.69 0.961863
Target:  5'- gCCGGCGUCAUCGaCGGUCA--GggGAUa -3'
miRNA:   3'- -GGUUGCAGUAGC-GCCGGUggCuaCUG- -5'
10573 3' -54.5 NC_002687.1 + 277132 0.67 0.985804
Target:  5'- gCCGG-GUCGUcCGaUGGCCGCCGAcgaGGCa -3'
miRNA:   3'- -GGUUgCAGUA-GC-GCCGGUGGCUa--CUG- -5'
10573 3' -54.5 NC_002687.1 + 277507 0.66 0.99394
Target:  5'- cCCcGCGcgcugccUCGUCgGCGGCCAUCGGacGACc -3'
miRNA:   3'- -GGuUGC-------AGUAG-CGCCGGUGGCUa-CUG- -5'
10573 3' -54.5 NC_002687.1 + 279020 0.67 0.988732
Target:  5'- uCCAGCGUCAgcugcauCGGUcccaacugcuuCACUGGUGACa -3'
miRNA:   3'- -GGUUGCAGUagc----GCCG-----------GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 279062 0.66 0.995407
Target:  5'- aCCAGCGgccUCAaacUCGCcGCCAUCGGcugugucUGGCg -3'
miRNA:   3'- -GGUUGC---AGU---AGCGcCGGUGGCU-------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 279784 0.73 0.861511
Target:  5'- aCAACGUCAUcaCGUGGUUACCccgacaGGUGGCa -3'
miRNA:   3'- gGUUGCAGUA--GCGCCGGUGG------CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 291686 0.66 0.992609
Target:  5'- gCAGCG-CAgcagcuacgacagccUCGCGGCCGCUG--GGCa -3'
miRNA:   3'- gGUUGCaGU---------------AGCGCCGGUGGCuaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.