miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 255152 0.66 0.995472
Target:  5'- gCGugGUCAaCgGgGGCCGCCGcguUGAUc -3'
miRNA:   3'- gGUugCAGUaG-CgCCGGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 254641 0.73 0.838986
Target:  5'- uCCGGCGUCAcgCGUGGCUGCUGc-GACa -3'
miRNA:   3'- -GGUUGCAGUa-GCGCCGGUGGCuaCUG- -5'
10573 3' -54.5 NC_002687.1 + 251067 0.68 0.980365
Target:  5'- gCUGACaGUCGUUGCuuucGGCCGCCGGguuucuuugcgGACa -3'
miRNA:   3'- -GGUUG-CAGUAGCG----CCGGUGGCUa----------CUG- -5'
10573 3' -54.5 NC_002687.1 + 243785 0.69 0.958471
Target:  5'- aCCAcCuUUAUCGUGGUgcucgauggcugCGCCGAUGACa -3'
miRNA:   3'- -GGUuGcAGUAGCGCCG------------GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 239539 0.67 0.987333
Target:  5'- ---gUGUUgaUGCGGgCGCCGGUGACg -3'
miRNA:   3'- gguuGCAGuaGCGCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 239118 0.68 0.975961
Target:  5'- aUCAugGUCucuUCGCucGGUgACCaGAUGGCg -3'
miRNA:   3'- -GGUugCAGu--AGCG--CCGgUGG-CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 239039 0.69 0.96806
Target:  5'- gCAGCGUCG--GUGGCCcACCGAacgauccgcaUGGCg -3'
miRNA:   3'- gGUUGCAGUagCGCCGG-UGGCU----------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 227602 0.67 0.988732
Target:  5'- aUCAGCucauccUCAUcCGCGGCUACCGuccGACc -3'
miRNA:   3'- -GGUUGc-----AGUA-GCGCCGGUGGCua-CUG- -5'
10573 3' -54.5 NC_002687.1 + 222216 0.66 0.994787
Target:  5'- aCCGugaGCGUCGgauuucggGCGGCaacgACCGAUGAg -3'
miRNA:   3'- -GGU---UGCAGUag------CGCCGg---UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 215350 0.67 0.987333
Target:  5'- aCGAUGUCGcCGCccucGGCCccGCCGGUGuCg -3'
miRNA:   3'- gGUUGCAGUaGCG----CCGG--UGGCUACuG- -5'
10573 3' -54.5 NC_002687.1 + 212414 0.72 0.868653
Target:  5'- aCCAGCGgacgCAggacuuugagGUGGCCGCgGAUGACa -3'
miRNA:   3'- -GGUUGCa---GUag--------CGCCGGUGgCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 212333 0.67 0.990007
Target:  5'- cUCGGCGUCuUCGgGcucGCCACCGucGACa -3'
miRNA:   3'- -GGUUGCAGuAGCgC---CGGUGGCuaCUG- -5'
10573 3' -54.5 NC_002687.1 + 212028 0.68 0.970874
Target:  5'- uCCAGCacaguuuuGUCAUcCGCGGCCACCu----- -3'
miRNA:   3'- -GGUUG--------CAGUA-GCGCCGGUGGcuacug -5'
10573 3' -54.5 NC_002687.1 + 209133 0.72 0.875603
Target:  5'- aCCAACGUCGUCGUGGUCGUCGucguCa -3'
miRNA:   3'- -GGUUGCAGUAGCGCCGGUGGCuacuG- -5'
10573 3' -54.5 NC_002687.1 + 209061 0.72 0.875603
Target:  5'- aCCAACGUCGUCGUGGUCGUCGucguCa -3'
miRNA:   3'- -GGUUGCAGUAGCGCCGGUGGCuacuG- -5'
10573 3' -54.5 NC_002687.1 + 206975 0.66 0.991167
Target:  5'- gUAAUGUUuUCGUGGUCGUCGAUGAg -3'
miRNA:   3'- gGUUGCAGuAGCGCCGGUGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 205002 0.66 0.993167
Target:  5'- aCCAAUGaCAccgcccgCGCuGUCACCGGUGAUu -3'
miRNA:   3'- -GGUUGCaGUa------GCGcCGGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 203667 0.7 0.947074
Target:  5'- aCAGCGUgAUCGUGGCCgACUG-UGuCg -3'
miRNA:   3'- gGUUGCAgUAGCGCCGG-UGGCuACuG- -5'
10573 3' -54.5 NC_002687.1 + 203346 0.69 0.965058
Target:  5'- -uGAUGUCGUCGUGaGUCACCGugGUGGa -3'
miRNA:   3'- ggUUGCAGUAGCGC-CGGUGGC--UACUg -5'
10573 3' -54.5 NC_002687.1 + 203159 0.71 0.907334
Target:  5'- aCAGCGUCuccgacuaUGgGGCCGCCGGUG-Ca -3'
miRNA:   3'- gGUUGCAGua------GCgCCGGUGGCUACuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.