miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 196625 0.66 0.994787
Target:  5'- aCCGugaGCGUCGgauuucggGCGGCaacgACCGAUGAg -3'
miRNA:   3'- -GGU---UGCAGUag------CGCCGg---UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 182452 0.67 0.985804
Target:  5'- aCCuuggguACGUCGUaGCGGgcgcgaCCGCCGAgGACa -3'
miRNA:   3'- -GGu-----UGCAGUAgCGCC------GGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 180653 0.66 0.995407
Target:  5'- aCCGugGUCAUCGaaggacuCGGUCuGCuCGAaGACg -3'
miRNA:   3'- -GGUugCAGUAGC-------GCCGG-UG-GCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 170160 0.71 0.901402
Target:  5'- gUCGACGUCggCGuCGGCCACgacaCGGUGGa -3'
miRNA:   3'- -GGUUGCAGuaGC-GCCGGUG----GCUACUg -5'
10573 3' -54.5 NC_002687.1 + 169794 0.67 0.990007
Target:  5'- uCCAcCGU-GUCGUGGCCgacGCCGAcgucGACa -3'
miRNA:   3'- -GGUuGCAgUAGCGCCGG---UGGCUa---CUG- -5'
10573 3' -54.5 NC_002687.1 + 161824 0.73 0.861511
Target:  5'- gCGugGUCcgCGUGGCCcugauGCUGAUGAa -3'
miRNA:   3'- gGUugCAGuaGCGCCGG-----UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 155120 0.67 0.987186
Target:  5'- aCGAUGUCGUCagagguacuaaugGCGuaCGCCGAcGACg -3'
miRNA:   3'- gGUUGCAGUAG-------------CGCcgGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 148406 0.7 0.947074
Target:  5'- gUCAAUGUCGUCGUugauGGCUauGCCGuUGAUg -3'
miRNA:   3'- -GGUUGCAGUAGCG----CCGG--UGGCuACUG- -5'
10573 3' -54.5 NC_002687.1 + 145306 0.67 0.985804
Target:  5'- -gAGCGUUGUgaacggCGCGGgCACCGAggUGGCu -3'
miRNA:   3'- ggUUGCAGUA------GCGCCgGUGGCU--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 143163 0.66 0.994787
Target:  5'- aCGAUGaCAUCGacaggucaaGGUUGCUGAUGACa -3'
miRNA:   3'- gGUUGCaGUAGCg--------CCGGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 141599 0.69 0.958471
Target:  5'- -gGACGUCGaCGCGGCCGugcuCCGcgGcACg -3'
miRNA:   3'- ggUUGCAGUaGCGCCGGU----GGCuaC-UG- -5'
10573 3' -54.5 NC_002687.1 + 139351 0.66 0.994787
Target:  5'- aCAugGUagagGUCGCGGUagacgggGCCGAUGGu -3'
miRNA:   3'- gGUugCAg---UAGCGCCGg------UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 134829 0.68 0.975961
Target:  5'- uCCGAUGUCgAUCGaGGCaCACCGGUa-- -3'
miRNA:   3'- -GGUUGCAG-UAGCgCCG-GUGGCUAcug -5'
10573 3' -54.5 NC_002687.1 + 129913 0.67 0.987908
Target:  5'- aCGACGaaagguuuggugguaUCAccCGCaGGCCuCCGGUGACa -3'
miRNA:   3'- gGUUGC---------------AGUa-GCG-CCGGuGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 126550 0.66 0.994021
Target:  5'- gCgGGCGUCuGUCGCG---ACCGGUGGCg -3'
miRNA:   3'- -GgUUGCAG-UAGCGCcggUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 122664 0.79 0.533935
Target:  5'- cUCGugGaaAUCGCGGCCGCCG-UGACu -3'
miRNA:   3'- -GGUugCagUAGCGCCGGUGGCuACUG- -5'
10573 3' -54.5 NC_002687.1 + 121756 0.66 0.994021
Target:  5'- cCCGACGUUuccagGUCGUaggagcagauGGUCAUCGGUGGu -3'
miRNA:   3'- -GGUUGCAG-----UAGCG----------CCGGUGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 117528 0.71 0.92385
Target:  5'- aCGACGaUCga-GCGGCCACCGA-GAg -3'
miRNA:   3'- gGUUGC-AGuagCGCCGGUGGCUaCUg -5'
10573 3' -54.5 NC_002687.1 + 114081 0.75 0.753919
Target:  5'- gCAGCGguaAUCGCGGUCGCCGucguggugGUGGCu -3'
miRNA:   3'- gGUUGCag-UAGCGCCGGUGGC--------UACUG- -5'
10573 3' -54.5 NC_002687.1 + 113087 0.67 0.988732
Target:  5'- -aAACGcCGUCGCGuuCAgCGGUGGCu -3'
miRNA:   3'- ggUUGCaGUAGCGCcgGUgGCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.