miRNA display CGI


Results 81 - 87 of 87 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 21134 0.7 0.938427
Target:  5'- gCGAcCGUCGUUGgGGCUACgGAaguUGACa -3'
miRNA:   3'- gGUU-GCAGUAGCgCCGGUGgCU---ACUG- -5'
10573 3' -54.5 NC_002687.1 + 10726 0.66 0.994787
Target:  5'- aCCccCGUCGcCGCaGCCACUccgccuucgGAUGACa -3'
miRNA:   3'- -GGuuGCAGUaGCGcCGGUGG---------CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 9545 0.66 0.992218
Target:  5'- uCCGGCGUCAgugUGagaGGCCcCCGuccaGACg -3'
miRNA:   3'- -GGUUGCAGUa--GCg--CCGGuGGCua--CUG- -5'
10573 3' -54.5 NC_002687.1 + 8870 0.67 0.985804
Target:  5'- -aAGCGUUcgCgGCGGaCCGCCGuacUGACu -3'
miRNA:   3'- ggUUGCAGuaG-CGCC-GGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 3217 0.67 0.988462
Target:  5'- uCCGACGUCGgcacCGGCCcuaaugagugcuCUGGUGACg -3'
miRNA:   3'- -GGUUGCAGUagc-GCCGGu-----------GGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 2856 0.69 0.96806
Target:  5'- gCGGCgGUC-UCGaGGgCGCCGAUGGCg -3'
miRNA:   3'- gGUUG-CAGuAGCgCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 1671 0.67 0.988732
Target:  5'- -uGACGUUGUCGCuuGGUauuUCGAUGACg -3'
miRNA:   3'- ggUUGCAGUAGCG--CCGgu-GGCUACUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.