miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 303826 1.13 0.006038
Target:  5'- aCCAACGUCAUCGCGGCCACCGAUGACa -3'
miRNA:   3'- -GGUUGCAGUAGCGCCGGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 38697 0.68 0.980365
Target:  5'- gCuACGUCAccCGUGGUagCAUCGAUGGCa -3'
miRNA:   3'- gGuUGCAGUa-GCGCCG--GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 8870 0.67 0.985804
Target:  5'- -aAGCGUUcgCgGCGGaCCGCCGuacUGACu -3'
miRNA:   3'- ggUUGCAGuaG-CGCC-GGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 255152 0.66 0.995472
Target:  5'- gCGugGUCAaCgGgGGCCGCCGcguUGAUc -3'
miRNA:   3'- gGUugCAGUaG-CgCCGGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 255783 0.73 0.838986
Target:  5'- -gAGCGaaaaCAUCGCGGCCGCUGG-GGCu -3'
miRNA:   3'- ggUUGCa---GUAGCGCCGGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 262668 0.73 0.854182
Target:  5'- aCAACGaCGUCGCGGCC-CUGcacgggucGUGGCg -3'
miRNA:   3'- gGUUGCaGUAGCGCCGGuGGC--------UACUG- -5'
10573 3' -54.5 NC_002687.1 + 203667 0.7 0.947074
Target:  5'- aCAGCGUgAUCGUGGCCgACUG-UGuCg -3'
miRNA:   3'- gGUUGCAgUAGCGCCGG-UGGCuACuG- -5'
10573 3' -54.5 NC_002687.1 + 243785 0.69 0.958471
Target:  5'- aCCAcCuUUAUCGUGGUgcucgauggcugCGCCGAUGACa -3'
miRNA:   3'- -GGUuGcAGUAGCGCCG------------GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 57122 0.69 0.96806
Target:  5'- gUCAACGggaugcugCAUCgGCGG-CGCUGAUGGCc -3'
miRNA:   3'- -GGUUGCa-------GUAG-CGCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 134829 0.68 0.975961
Target:  5'- uCCGAUGUCgAUCGaGGCaCACCGGUa-- -3'
miRNA:   3'- -GGUUGCAG-UAGCgCCG-GUGGCUAcug -5'
10573 3' -54.5 NC_002687.1 + 212028 0.68 0.970874
Target:  5'- uCCAGCacaguuuuGUCAUcCGCGGCCACCu----- -3'
miRNA:   3'- -GGUUG--------CAGUA-GCGCCGGUGGcuacug -5'
10573 3' -54.5 NC_002687.1 + 2856 0.69 0.96806
Target:  5'- gCGGCgGUC-UCGaGGgCGCCGAUGGCg -3'
miRNA:   3'- gGUUG-CAGuAGCgCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 122664 0.79 0.533935
Target:  5'- cUCGugGaaAUCGCGGCCGCCG-UGACu -3'
miRNA:   3'- -GGUugCagUAGCGCCGGUGGCuACUG- -5'
10573 3' -54.5 NC_002687.1 + 292987 0.68 0.973506
Target:  5'- -aGACGaaaUCAgcugCGCGcGCUcuGCCGAUGACa -3'
miRNA:   3'- ggUUGC---AGUa---GCGC-CGG--UGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 109950 0.78 0.599948
Target:  5'- gCAACGUaaugcgagggcucUAUUGCGGCaCACCGGUGGCc -3'
miRNA:   3'- gGUUGCA-------------GUAGCGCCG-GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 272264 0.69 0.961863
Target:  5'- gCCGGCGUCAUCGaCGGUCA--GggGAUa -3'
miRNA:   3'- -GGUUGCAGUAGC-GCCGGUggCuaCUG- -5'
10573 3' -54.5 NC_002687.1 + 109039 0.68 0.975961
Target:  5'- gUCGGCGgaagCAUCgGCGcugaCGCCGAUGGCg -3'
miRNA:   3'- -GGUUGCa---GUAG-CGCcg--GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 312750 0.68 0.982327
Target:  5'- aCCAACGcgaGUCGauauGGCCGCCGucgcgGAUa -3'
miRNA:   3'- -GGUUGCag-UAGCg---CCGGUGGCua---CUG- -5'
10573 3' -54.5 NC_002687.1 + 111321 0.74 0.814935
Target:  5'- aCggUGUCAacaUCGCGGCCaucACCGAUGuuuCg -3'
miRNA:   3'- gGuuGCAGU---AGCGCCGG---UGGCUACu--G- -5'
10573 3' -54.5 NC_002687.1 + 203159 0.71 0.907334
Target:  5'- aCAGCGUCuccgacuaUGgGGCCGCCGGUG-Ca -3'
miRNA:   3'- gGUUGCAGua------GCgCCGGUGGCUACuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.