miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 277132 0.67 0.985804
Target:  5'- gCCGG-GUCGUcCGaUGGCCGCCGAcgaGGCa -3'
miRNA:   3'- -GGUUgCAGUA-GC-GCCGGUGGCUa--CUG- -5'
10573 3' -54.5 NC_002687.1 + 8870 0.67 0.985804
Target:  5'- -aAGCGUUcgCgGCGGaCCGCCGuacUGACu -3'
miRNA:   3'- ggUUGCAGuaG-CGCC-GGUGGCu--ACUG- -5'
10573 3' -54.5 NC_002687.1 + 2856 0.69 0.96806
Target:  5'- gCGGCgGUC-UCGaGGgCGCCGAUGGCg -3'
miRNA:   3'- gGUUG-CAGuAGCgCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 111321 0.74 0.814935
Target:  5'- aCggUGUCAacaUCGCGGCCaucACCGAUGuuuCg -3'
miRNA:   3'- gGuuGCAGU---AGCGCCGG---UGGCUACu--G- -5'
10573 3' -54.5 NC_002687.1 + 9545 0.66 0.992218
Target:  5'- uCCGGCGUCAgugUGagaGGCCcCCGuccaGACg -3'
miRNA:   3'- -GGUUGCAGUa--GCg--CCGGuGGCua--CUG- -5'
10573 3' -54.5 NC_002687.1 + 279020 0.67 0.988732
Target:  5'- uCCAGCGUCAgcugcauCGGUcccaacugcuuCACUGGUGACa -3'
miRNA:   3'- -GGUUGCAGUagc----GCCG-----------GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 38697 0.68 0.980365
Target:  5'- gCuACGUCAccCGUGGUagCAUCGAUGGCa -3'
miRNA:   3'- gGuUGCAGUa-GCGCCG--GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 109950 0.78 0.599948
Target:  5'- gCAACGUaaugcgagggcucUAUUGCGGCaCACCGGUGGCc -3'
miRNA:   3'- gGUUGCA-------------GUAGCGCCG-GUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 1671 0.67 0.988732
Target:  5'- -uGACGUUGUCGCuuGGUauuUCGAUGACg -3'
miRNA:   3'- ggUUGCAGUAGCG--CCGgu-GGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 122664 0.79 0.533935
Target:  5'- cUCGugGaaAUCGCGGCCGCCG-UGACu -3'
miRNA:   3'- -GGUugCagUAGCGCCGGUGGCuACUG- -5'
10573 3' -54.5 NC_002687.1 + 312750 0.68 0.982327
Target:  5'- aCCAACGcgaGUCGauauGGCCGCCGucgcgGAUa -3'
miRNA:   3'- -GGUUGCag-UAGCg---CCGGUGGCua---CUG- -5'
10573 3' -54.5 NC_002687.1 + 155120 0.67 0.987186
Target:  5'- aCGAUGUCGUCagagguacuaaugGCGuaCGCCGAcGACg -3'
miRNA:   3'- gGUUGCAGUAG-------------CGCcgGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 292987 0.68 0.973506
Target:  5'- -aGACGaaaUCAgcugCGCGcGCUcuGCCGAUGACa -3'
miRNA:   3'- ggUUGC---AGUa---GCGC-CGG--UGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 57122 0.69 0.96806
Target:  5'- gUCAACGggaugcugCAUCgGCGG-CGCUGAUGGCc -3'
miRNA:   3'- -GGUUGCa-------GUAG-CGCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 203667 0.7 0.947074
Target:  5'- aCAGCGUgAUCGUGGCCgACUG-UGuCg -3'
miRNA:   3'- gGUUGCAgUAGCGCCGG-UGGCuACuG- -5'
10573 3' -54.5 NC_002687.1 + 255783 0.73 0.838986
Target:  5'- -gAGCGaaaaCAUCGCGGCCGCUGG-GGCu -3'
miRNA:   3'- ggUUGCa---GUAGCGCCGGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 99544 0.66 0.994021
Target:  5'- -aGGCgGUCGUCGCGGCgcuCGCgCGAUcGAUa -3'
miRNA:   3'- ggUUG-CAGUAGCGCCG---GUG-GCUA-CUG- -5'
10573 3' -54.5 NC_002687.1 + 308829 0.66 0.992218
Target:  5'- uCCGcCGcagCAUCGauGCCACCGGaGGCc -3'
miRNA:   3'- -GGUuGCa--GUAGCgcCGGUGGCUaCUG- -5'
10573 3' -54.5 NC_002687.1 + 112052 0.66 0.991167
Target:  5'- uUCAAugcCGUCGUCGauGCCAUUGGccuUGACa -3'
miRNA:   3'- -GGUU---GCAGUAGCgcCGGUGGCU---ACUG- -5'
10573 3' -54.5 NC_002687.1 + 169794 0.67 0.990007
Target:  5'- uCCAcCGU-GUCGUGGCCgacGCCGAcgucGACa -3'
miRNA:   3'- -GGUuGCAgUAGCGCCGG---UGGCUa---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.