miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 222216 0.66 0.994787
Target:  5'- aCCGugaGCGUCGgauuucggGCGGCaacgACCGAUGAg -3'
miRNA:   3'- -GGU---UGCAGUag------CGCCGg---UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 196625 0.66 0.994787
Target:  5'- aCCGugaGCGUCGgauuucggGCGGCaacgACCGAUGAg -3'
miRNA:   3'- -GGU---UGCAGUag------CGCCGg---UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 239118 0.68 0.975961
Target:  5'- aUCAugGUCucuUCGCucGGUgACCaGAUGGCg -3'
miRNA:   3'- -GGUugCAGu--AGCG--CCGgUGG-CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 263184 0.68 0.975961
Target:  5'- -gAugGUCucGUUGCGGCgGCaGGUGACg -3'
miRNA:   3'- ggUugCAG--UAGCGCCGgUGgCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 254641 0.73 0.838986
Target:  5'- uCCGGCGUCAcgCGUGGCUGCUGc-GACa -3'
miRNA:   3'- -GGUUGCAGUa-GCGCCGGUGGCuaCUG- -5'
10573 3' -54.5 NC_002687.1 + 279784 0.73 0.861511
Target:  5'- aCAACGUCAUcaCGUGGUUACCccgacaGGUGGCa -3'
miRNA:   3'- gGUUGCAGUA--GCGCCGGUGG------CUACUG- -5'
10573 3' -54.5 NC_002687.1 + 161824 0.73 0.861511
Target:  5'- gCGugGUCcgCGUGGCCcugauGCUGAUGAa -3'
miRNA:   3'- gGUugCAGuaGCGCCGG-----UGGCUACUg -5'
10573 3' -54.5 NC_002687.1 + 212414 0.72 0.868653
Target:  5'- aCCAGCGgacgCAggacuuugagGUGGCCGCgGAUGACa -3'
miRNA:   3'- -GGUUGCa---GUag--------CGCCGGUGgCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 209133 0.72 0.875603
Target:  5'- aCCAACGUCGUCGUGGUCGUCGucguCa -3'
miRNA:   3'- -GGUUGCAGUAGCGCCGGUGGCuacuG- -5'
10573 3' -54.5 NC_002687.1 + 209061 0.72 0.875603
Target:  5'- aCCAACGUCGUCGUGGUCGUCGucguCa -3'
miRNA:   3'- -GGUUGCAGUAGCGCCGGUGGCuacuG- -5'
10573 3' -54.5 NC_002687.1 + 170160 0.71 0.901402
Target:  5'- gUCGACGUCggCGuCGGCCACgacaCGGUGGa -3'
miRNA:   3'- -GGUUGCAGuaGC-GCCGGUG----GCUACUg -5'
10573 3' -54.5 NC_002687.1 + 111946 0.71 0.907334
Target:  5'- gCUAACGUCGuUCGuCGGCgUACCGGagGACa -3'
miRNA:   3'- -GGUUGCAGU-AGC-GCCG-GUGGCUa-CUG- -5'
10573 3' -54.5 NC_002687.1 + 38302 0.71 0.92385
Target:  5'- uCCAugGUUAUCGUGGCCcuACagGAagGACa -3'
miRNA:   3'- -GGUugCAGUAGCGCCGG--UGg-CUa-CUG- -5'
10573 3' -54.5 NC_002687.1 + 117528 0.71 0.92385
Target:  5'- aCGACGaUCga-GCGGCCACCGA-GAg -3'
miRNA:   3'- gGUUGC-AGuagCGCCGGUGGCUaCUg -5'
10573 3' -54.5 NC_002687.1 + 21134 0.7 0.938427
Target:  5'- gCGAcCGUCGUUGgGGCUACgGAaguUGACa -3'
miRNA:   3'- gGUU-GCAGUAGCgCCGGUGgCU---ACUG- -5'
10573 3' -54.5 NC_002687.1 + 141599 0.69 0.958471
Target:  5'- -gGACGUCGaCGCGGCCGugcuCCGcgGcACg -3'
miRNA:   3'- ggUUGCAGUaGCGCCGGU----GGCuaC-UG- -5'
10573 3' -54.5 NC_002687.1 + 203346 0.69 0.965058
Target:  5'- -uGAUGUCGUCGUGaGUCACCGugGUGGa -3'
miRNA:   3'- ggUUGCAGUAGCGC-CGGUGGC--UACUg -5'
10573 3' -54.5 NC_002687.1 + 239039 0.69 0.96806
Target:  5'- gCAGCGUCG--GUGGCCcACCGAacgauccgcaUGGCg -3'
miRNA:   3'- gGUUGCAGUagCGCCGG-UGGCU----------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 110673 0.68 0.970874
Target:  5'- gCCAACGUCAcccagCGCGGCCuuguACaCGAUu-- -3'
miRNA:   3'- -GGUUGCAGUa----GCGCCGG----UG-GCUAcug -5'
10573 3' -54.5 NC_002687.1 + 38871 0.68 0.975961
Target:  5'- ----gGUUAUCGaGGgCACCGGUGGCg -3'
miRNA:   3'- gguugCAGUAGCgCCgGUGGCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.