Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 38871 | 0.68 | 0.975961 |
Target: 5'- ----gGUUAUCGaGGgCACCGGUGGCg -3' miRNA: 3'- gguugCAGUAGCgCCgGUGGCUACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 110673 | 0.68 | 0.970874 |
Target: 5'- gCCAACGUCAcccagCGCGGCCuuguACaCGAUu-- -3' miRNA: 3'- -GGUUGCAGUa----GCGCCGG----UG-GCUAcug -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 239039 | 0.69 | 0.96806 |
Target: 5'- gCAGCGUCG--GUGGCCcACCGAacgauccgcaUGGCg -3' miRNA: 3'- gGUUGCAGUagCGCCGG-UGGCU----------ACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 203346 | 0.69 | 0.965058 |
Target: 5'- -uGAUGUCGUCGUGaGUCACCGugGUGGa -3' miRNA: 3'- ggUUGCAGUAGCGC-CGGUGGC--UACUg -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 141599 | 0.69 | 0.958471 |
Target: 5'- -gGACGUCGaCGCGGCCGugcuCCGcgGcACg -3' miRNA: 3'- ggUUGCAGUaGCGCCGGU----GGCuaC-UG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 263015 | 0.69 | 0.954507 |
Target: 5'- gCGACGUCGUUGuUGGUgGCCGGgaguuucUGGCa -3' miRNA: 3'- gGUUGCAGUAGC-GCCGgUGGCU-------ACUG- -5' |
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10573 | 3' | -54.5 | NC_002687.1 | + | 304196 | 0.74 | 0.814935 |
Target: 5'- cCCGcuGCuGUCAUCgGUGGCCG-CGAUGACg -3' miRNA: 3'- -GGU--UG-CAGUAG-CGCCGGUgGCUACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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