miRNA display CGI


Results 81 - 87 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 3' -54.5 NC_002687.1 + 38871 0.68 0.975961
Target:  5'- ----gGUUAUCGaGGgCACCGGUGGCg -3'
miRNA:   3'- gguugCAGUAGCgCCgGUGGCUACUG- -5'
10573 3' -54.5 NC_002687.1 + 110673 0.68 0.970874
Target:  5'- gCCAACGUCAcccagCGCGGCCuuguACaCGAUu-- -3'
miRNA:   3'- -GGUUGCAGUa----GCGCCGG----UG-GCUAcug -5'
10573 3' -54.5 NC_002687.1 + 239039 0.69 0.96806
Target:  5'- gCAGCGUCG--GUGGCCcACCGAacgauccgcaUGGCg -3'
miRNA:   3'- gGUUGCAGUagCGCCGG-UGGCU----------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 203346 0.69 0.965058
Target:  5'- -uGAUGUCGUCGUGaGUCACCGugGUGGa -3'
miRNA:   3'- ggUUGCAGUAGCGC-CGGUGGC--UACUg -5'
10573 3' -54.5 NC_002687.1 + 141599 0.69 0.958471
Target:  5'- -gGACGUCGaCGCGGCCGugcuCCGcgGcACg -3'
miRNA:   3'- ggUUGCAGUaGCGCCGGU----GGCuaC-UG- -5'
10573 3' -54.5 NC_002687.1 + 263015 0.69 0.954507
Target:  5'- gCGACGUCGUUGuUGGUgGCCGGgaguuucUGGCa -3'
miRNA:   3'- gGUUGCAGUAGC-GCCGgUGGCU-------ACUG- -5'
10573 3' -54.5 NC_002687.1 + 304196 0.74 0.814935
Target:  5'- cCCGcuGCuGUCAUCgGUGGCCG-CGAUGACg -3'
miRNA:   3'- -GGU--UG-CAGUAG-CGCCGGUgGCUACUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.