Results 61 - 80 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 9545 | 0.66 | 0.992218 |
Target: 5'- uCCGGCGUCAgugUGagaGGCCcCCGuccaGACg -3' miRNA: 3'- -GGUUGCAGUa--GCg--CCGGuGGCua--CUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 308829 | 0.66 | 0.992218 |
Target: 5'- uCCGcCGcagCAUCGauGCCACCGGaGGCc -3' miRNA: 3'- -GGUuGCa--GUAGCgcCGGUGGCUaCUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 312750 | 0.68 | 0.982327 |
Target: 5'- aCCAACGcgaGUCGauauGGCCGCCGucgcgGAUa -3' miRNA: 3'- -GGUUGCag-UAGCg---CCGGUGGCua---CUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 38697 | 0.68 | 0.980365 |
Target: 5'- gCuACGUCAccCGUGGUagCAUCGAUGGCa -3' miRNA: 3'- gGuUGCAGUa-GCGCCG--GUGGCUACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 122664 | 0.79 | 0.533935 |
Target: 5'- cUCGugGaaAUCGCGGCCGCCG-UGACu -3' miRNA: 3'- -GGUugCagUAGCGCCGGUGGCuACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 109950 | 0.78 | 0.599948 |
Target: 5'- gCAACGUaaugcgagggcucUAUUGCGGCaCACCGGUGGCc -3' miRNA: 3'- gGUUGCA-------------GUAGCGCCG-GUGGCUACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 111321 | 0.74 | 0.814935 |
Target: 5'- aCggUGUCAacaUCGCGGCCaucACCGAUGuuuCg -3' miRNA: 3'- gGuuGCAGU---AGCGCCGG---UGGCUACu--G- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 255783 | 0.73 | 0.838986 |
Target: 5'- -gAGCGaaaaCAUCGCGGCCGCUGG-GGCu -3' miRNA: 3'- ggUUGCa---GUAGCGCCGGUGGCUaCUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 262668 | 0.73 | 0.854182 |
Target: 5'- aCAACGaCGUCGCGGCC-CUGcacgggucGUGGCg -3' miRNA: 3'- gGUUGCaGUAGCGCCGGuGGC--------UACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 203159 | 0.71 | 0.907334 |
Target: 5'- aCAGCGUCuccgacuaUGgGGCCGCCGGUG-Ca -3' miRNA: 3'- gGUUGCAGua------GCgCCGGUGGCUACuG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 203667 | 0.7 | 0.947074 |
Target: 5'- aCAGCGUgAUCGUGGCCgACUG-UGuCg -3' miRNA: 3'- gGUUGCAgUAGCGCCGG-UGGCuACuG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 243785 | 0.69 | 0.958471 |
Target: 5'- aCCAcCuUUAUCGUGGUgcucgauggcugCGCCGAUGACa -3' miRNA: 3'- -GGUuGcAGUAGCGCCG------------GUGGCUACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 272264 | 0.69 | 0.961863 |
Target: 5'- gCCGGCGUCAUCGaCGGUCA--GggGAUa -3' miRNA: 3'- -GGUUGCAGUAGC-GCCGGUggCuaCUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 2856 | 0.69 | 0.96806 |
Target: 5'- gCGGCgGUC-UCGaGGgCGCCGAUGGCg -3' miRNA: 3'- gGUUG-CAGuAGCgCCgGUGGCUACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 57122 | 0.69 | 0.96806 |
Target: 5'- gUCAACGggaugcugCAUCgGCGG-CGCUGAUGGCc -3' miRNA: 3'- -GGUUGCa-------GUAG-CGCCgGUGGCUACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 55212 | 0.68 | 0.970874 |
Target: 5'- gCCAAgGcCAUCGacuacuguucguCGGCCGCC-AUGGCa -3' miRNA: 3'- -GGUUgCaGUAGC------------GCCGGUGGcUACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 212028 | 0.68 | 0.970874 |
Target: 5'- uCCAGCacaguuuuGUCAUcCGCGGCCACCu----- -3' miRNA: 3'- -GGUUG--------CAGUA-GCGCCGGUGGcuacug -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 292987 | 0.68 | 0.973506 |
Target: 5'- -aGACGaaaUCAgcugCGCGcGCUcuGCCGAUGACa -3' miRNA: 3'- ggUUGC---AGUa---GCGC-CGG--UGGCUACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 109039 | 0.68 | 0.975961 |
Target: 5'- gUCGGCGgaagCAUCgGCGcugaCGCCGAUGGCg -3' miRNA: 3'- -GGUUGCa---GUAG-CGCcg--GUGGCUACUG- -5' |
|||||||
10573 | 3' | -54.5 | NC_002687.1 | + | 134829 | 0.68 | 0.975961 |
Target: 5'- uCCGAUGUCgAUCGaGGCaCACCGGUa-- -3' miRNA: 3'- -GGUUGCAG-UAGCgCCG-GUGGCUAcug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home