miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10573 5' -60 NC_002687.1 + 167285 0.66 0.88854
Target:  5'- -uGUUCCCGGcguacAGCAGCUGaAGCUGUu -3'
miRNA:   3'- auCGGGGGCC-----UCGUUGGCaUCGACGu -5'
10573 5' -60 NC_002687.1 + 308777 0.66 0.882027
Target:  5'- -cGCCCcgCCGGGGUcGCCGggUGGCUGg- -3'
miRNA:   3'- auCGGG--GGCCUCGuUGGC--AUCGACgu -5'
10573 5' -60 NC_002687.1 + 317000 0.66 0.868413
Target:  5'- aGGCUCCCGGuGUcaaaAGCC--AGCUGCu -3'
miRNA:   3'- aUCGGGGGCCuCG----UUGGcaUCGACGu -5'
10573 5' -60 NC_002687.1 + 131035 0.66 0.86132
Target:  5'- gUAGCUCCCGGAcgauGCcgauGACaCGguguGCUGCAa -3'
miRNA:   3'- -AUCGGGGGCCU----CG----UUG-GCau--CGACGU- -5'
10573 5' -60 NC_002687.1 + 267109 0.67 0.846589
Target:  5'- uUGGUUCCUGGuGCAACCaauuGUUGCAg -3'
miRNA:   3'- -AUCGGGGGCCuCGUUGGcau-CGACGU- -5'
10573 5' -60 NC_002687.1 + 152516 0.67 0.838961
Target:  5'- -uGCCUUCGG-GCAAUgGcuUAGCUGCAu -3'
miRNA:   3'- auCGGGGGCCuCGUUGgC--AUCGACGU- -5'
10573 5' -60 NC_002687.1 + 36530 0.67 0.838961
Target:  5'- -uGCCUUCGG-GCAAUgGcuUAGCUGCAu -3'
miRNA:   3'- auCGGGGGCCuCGUUGgC--AUCGACGU- -5'
10573 5' -60 NC_002687.1 + 309194 0.67 0.831166
Target:  5'- aGGCCUCCGGuGGC-AUCGauGCUGCGg -3'
miRNA:   3'- aUCGGGGGCC-UCGuUGGCauCGACGU- -5'
10573 5' -60 NC_002687.1 + 254436 0.68 0.798444
Target:  5'- aAGCCagCGGGGCGAUgaucuucgacaCGUAGUUGCAc -3'
miRNA:   3'- aUCGGggGCCUCGUUG-----------GCAUCGACGU- -5'
10573 5' -60 NC_002687.1 + 87421 0.68 0.789912
Target:  5'- cAGCCCggcuaccagaugCCGGuGCAACCGgugcaAGCgggGCAg -3'
miRNA:   3'- aUCGGG------------GGCCuCGUUGGCa----UCGa--CGU- -5'
10573 5' -60 NC_002687.1 + 25897 0.68 0.772476
Target:  5'- aGGCCUCCGaAGCAuCCcccugAGCUGCAg -3'
miRNA:   3'- aUCGGGGGCcUCGUuGGca---UCGACGU- -5'
10573 5' -60 NC_002687.1 + 47286 0.69 0.73633
Target:  5'- gGGCCUCCGGAGuCAACCu--GUUGUu -3'
miRNA:   3'- aUCGGGGGCCUC-GUUGGcauCGACGu -5'
10573 5' -60 NC_002687.1 + 301711 0.69 0.727073
Target:  5'- -cGuCCCCCGGAGCugaaCG-AGUUGCAu -3'
miRNA:   3'- auC-GGGGGCCUCGuug-GCaUCGACGU- -5'
10573 5' -60 NC_002687.1 + 17800 0.7 0.689394
Target:  5'- cGGCCUCUuGaAGCAGCCGcugcGGCUGCAa -3'
miRNA:   3'- aUCGGGGGcC-UCGUUGGCa---UCGACGU- -5'
10573 5' -60 NC_002687.1 + 298990 0.7 0.660664
Target:  5'- -cGCCUCCGGAGC-ACCGaGGaagGCAg -3'
miRNA:   3'- auCGGGGGCCUCGuUGGCaUCga-CGU- -5'
10573 5' -60 NC_002687.1 + 291748 0.7 0.660664
Target:  5'- gAGCgCCCGGgcaagcAGCGACCGcAGCaGCAg -3'
miRNA:   3'- aUCGgGGGCC------UCGUUGGCaUCGaCGU- -5'
10573 5' -60 NC_002687.1 + 10397 0.71 0.622102
Target:  5'- aGGCag-CGGAcGCGACCGUGGUUGCAg -3'
miRNA:   3'- aUCGgggGCCU-CGUUGGCAUCGACGU- -5'
10573 5' -60 NC_002687.1 + 216578 0.72 0.536308
Target:  5'- -uGCacaaCCCGGGGCAAccCCGUuGCUGCGa -3'
miRNA:   3'- auCGg---GGGCCUCGUU--GGCAuCGACGU- -5'
10573 5' -60 NC_002687.1 + 303863 1.06 0.003548
Target:  5'- cUAGCCCCCGGAGCAACCGUAGCUGCAg -3'
miRNA:   3'- -AUCGGGGGCCUCGUUGGCAUCGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.