miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10574 3' -53.3 NC_002687.1 + 280690 0.66 0.997789
Target:  5'- aGUUcCC-CUGCCg-CG-UGAUGCCGg -3'
miRNA:   3'- gCAGuGGuGACGGaaGCaACUACGGC- -5'
10574 3' -53.3 NC_002687.1 + 224259 0.66 0.997789
Target:  5'- gCGaUGCUACUGCCgaUGccGAUGCCGa -3'
miRNA:   3'- -GCaGUGGUGACGGaaGCaaCUACGGC- -5'
10574 3' -53.3 NC_002687.1 + 307845 0.66 0.997789
Target:  5'- uCGUCAuCCAgUGCCccugUGUUGgcGCCc -3'
miRNA:   3'- -GCAGU-GGUgACGGaa--GCAACuaCGGc -5'
10574 3' -53.3 NC_002687.1 + 163986 0.66 0.9974
Target:  5'- uGUCGCCA---UCUUCGUcGGUGUCGa -3'
miRNA:   3'- gCAGUGGUgacGGAAGCAaCUACGGC- -5'
10574 3' -53.3 NC_002687.1 + 195945 0.66 0.995818
Target:  5'- cCGUCGCCAUacgcugUGCCUcgugcucUCGUUGuugGUCa -3'
miRNA:   3'- -GCAGUGGUG------ACGGA-------AGCAACua-CGGc -5'
10574 3' -53.3 NC_002687.1 + 20110 0.66 0.995818
Target:  5'- cCGUCGCCAUacgcugUGCCUcgugcucUCGUUGuugGUCa -3'
miRNA:   3'- -GCAGUGGUG------ACGGA-------AGCAACua-CGGc -5'
10574 3' -53.3 NC_002687.1 + 208752 0.67 0.994509
Target:  5'- uCGUCACUGCUGCUUccaucgUCGUcGcUGCUGc -3'
miRNA:   3'- -GCAGUGGUGACGGA------AGCAaCuACGGC- -5'
10574 3' -53.3 NC_002687.1 + 208605 0.67 0.994509
Target:  5'- uCGUCACUGCUGCUUccaucgUCGUcGcUGCUGc -3'
miRNA:   3'- -GCAGUGGUGACGGA------AGCAaCuACGGC- -5'
10574 3' -53.3 NC_002687.1 + 5314 0.67 0.994275
Target:  5'- -uUCGCCAUUGCCUUguauagcgcuuuccUGUUGAcGUCGu -3'
miRNA:   3'- gcAGUGGUGACGGAA--------------GCAACUaCGGC- -5'
10574 3' -53.3 NC_002687.1 + 99571 0.67 0.992792
Target:  5'- uCGUagCACC-CUGUCUUCGUUGGcgaGCUGc -3'
miRNA:   3'- -GCA--GUGGuGACGGAAGCAACUa--CGGC- -5'
10574 3' -53.3 NC_002687.1 + 322592 0.68 0.989312
Target:  5'- gCGUCACCaagGCUGaggCUUUGUagaagguUGAUGCCu -3'
miRNA:   3'- -GCAGUGG---UGACg--GAAGCA-------ACUACGGc -5'
10574 3' -53.3 NC_002687.1 + 261251 0.68 0.986605
Target:  5'- uGUCggcaGCCucguCUGCCUcgUCGUUGAUcucgcaggaGCCGg -3'
miRNA:   3'- gCAG----UGGu---GACGGA--AGCAACUA---------CGGC- -5'
10574 3' -53.3 NC_002687.1 + 208931 0.68 0.984984
Target:  5'- uCGUCGCUGCUGCUUccaUCGUcGcUGCUGc -3'
miRNA:   3'- -GCAGUGGUGACGGA---AGCAaCuACGGC- -5'
10574 3' -53.3 NC_002687.1 + 305396 0.68 0.983217
Target:  5'- uGUCACCGCUGUCa--GgaGcgGCCGc -3'
miRNA:   3'- gCAGUGGUGACGGaagCaaCuaCGGC- -5'
10574 3' -53.3 NC_002687.1 + 208877 0.69 0.981298
Target:  5'- uCGUCGCUGCUGCUUccaUCGUcGcUGCUGu -3'
miRNA:   3'- -GCAGUGGUGACGGA---AGCAaCuACGGC- -5'
10574 3' -53.3 NC_002687.1 + 208713 0.69 0.979219
Target:  5'- uCGUCGCUGCUGCUcccaUCGUccuugagguccuUGGUGUCGu -3'
miRNA:   3'- -GCAGUGGUGACGGa---AGCA------------ACUACGGC- -5'
10574 3' -53.3 NC_002687.1 + 259612 0.69 0.979219
Target:  5'- -uUCACCGCcucgUGCCgauuggUGUUGGUGUCGa -3'
miRNA:   3'- gcAGUGGUG----ACGGaa----GCAACUACGGC- -5'
10574 3' -53.3 NC_002687.1 + 208566 0.7 0.966193
Target:  5'- uCGUCGCUGCUGCUgUCGcUGcUGCUGc -3'
miRNA:   3'- -GCAGUGGUGACGGaAGCaACuACGGC- -5'
10574 3' -53.3 NC_002687.1 + 226935 0.7 0.961018
Target:  5'- gCGUCGCCccgucggcuccgucgGCUGCCggUGgUGGUGUCGg -3'
miRNA:   3'- -GCAGUGG---------------UGACGGaaGCaACUACGGC- -5'
10574 3' -53.3 NC_002687.1 + 10722 0.7 0.956061
Target:  5'- cCGUCGCCGCagccacuccGCCUUCGgaUGAcacUGCCa -3'
miRNA:   3'- -GCAGUGGUGa--------CGGAAGCa-ACU---ACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.