Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10574 | 3' | -53.3 | NC_002687.1 | + | 307339 | 1.09 | 0.012639 |
Target: 5'- uCGUCACCACUGCCUUCGUUGAUGCCGu -3' miRNA: 3'- -GCAGUGGUGACGGAAGCAACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 101010 | 0.76 | 0.743205 |
Target: 5'- gCGgCACCGgUGUCgaCGUUGAUGCCGa -3' miRNA: 3'- -GCaGUGGUgACGGaaGCAACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 161973 | 0.74 | 0.822906 |
Target: 5'- uCGUCACUauGCUGgCggagUCGUUGGUGUCGu -3' miRNA: 3'- -GCAGUGG--UGACgGa---AGCAACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 44357 | 0.73 | 0.883031 |
Target: 5'- cCGUCugCGCcgGCCUcCGUcGAUGCUGu -3' miRNA: 3'- -GCAGugGUGa-CGGAaGCAaCUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 313008 | 0.73 | 0.876189 |
Target: 5'- gCGUgACCACUGCCgaaaaCGcaaUUGAUGCUGu -3' miRNA: 3'- -GCAgUGGUGACGGaa---GC---AACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 10722 | 0.7 | 0.956061 |
Target: 5'- cCGUCGCCGCagccacuccGCCUUCGgaUGAcacUGCCa -3' miRNA: 3'- -GCAGUGGUGa--------CGGAAGCa-ACU---ACGGc -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 226935 | 0.7 | 0.961018 |
Target: 5'- gCGUCGCCccgucggcuccgucgGCUGCCggUGgUGGUGUCGg -3' miRNA: 3'- -GCAGUGG---------------UGACGGaaGCaACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 208566 | 0.7 | 0.966193 |
Target: 5'- uCGUCGCUGCUGCUgUCGcUGcUGCUGc -3' miRNA: 3'- -GCAGUGGUGACGGaAGCaACuACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 208713 | 0.69 | 0.979219 |
Target: 5'- uCGUCGCUGCUGCUcccaUCGUccuugagguccuUGGUGUCGu -3' miRNA: 3'- -GCAGUGGUGACGGa---AGCA------------ACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 208877 | 0.69 | 0.981298 |
Target: 5'- uCGUCGCUGCUGCUUccaUCGUcGcUGCUGu -3' miRNA: 3'- -GCAGUGGUGACGGA---AGCAaCuACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 259612 | 0.69 | 0.979219 |
Target: 5'- -uUCACCGCcucgUGCCgauuggUGUUGGUGUCGa -3' miRNA: 3'- gcAGUGGUG----ACGGaa----GCAACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 322592 | 0.68 | 0.989312 |
Target: 5'- gCGUCACCaagGCUGaggCUUUGUagaagguUGAUGCCu -3' miRNA: 3'- -GCAGUGG---UGACg--GAAGCA-------ACUACGGc -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 261251 | 0.68 | 0.986605 |
Target: 5'- uGUCggcaGCCucguCUGCCUcgUCGUUGAUcucgcaggaGCCGg -3' miRNA: 3'- gCAG----UGGu---GACGGA--AGCAACUA---------CGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 208931 | 0.68 | 0.984984 |
Target: 5'- uCGUCGCUGCUGCUUccaUCGUcGcUGCUGc -3' miRNA: 3'- -GCAGUGGUGACGGA---AGCAaCuACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 305396 | 0.68 | 0.983217 |
Target: 5'- uGUCACCGCUGUCa--GgaGcgGCCGc -3' miRNA: 3'- gCAGUGGUGACGGaagCaaCuaCGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 99571 | 0.67 | 0.992792 |
Target: 5'- uCGUagCACC-CUGUCUUCGUUGGcgaGCUGc -3' miRNA: 3'- -GCA--GUGGuGACGGAAGCAACUa--CGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 208752 | 0.67 | 0.994509 |
Target: 5'- uCGUCACUGCUGCUUccaucgUCGUcGcUGCUGc -3' miRNA: 3'- -GCAGUGGUGACGGA------AGCAaCuACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 208605 | 0.67 | 0.994509 |
Target: 5'- uCGUCACUGCUGCUUccaucgUCGUcGcUGCUGc -3' miRNA: 3'- -GCAGUGGUGACGGA------AGCAaCuACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 5314 | 0.67 | 0.994275 |
Target: 5'- -uUCGCCAUUGCCUUguauagcgcuuuccUGUUGAcGUCGu -3' miRNA: 3'- gcAGUGGUGACGGAA--------------GCAACUaCGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 307845 | 0.66 | 0.997789 |
Target: 5'- uCGUCAuCCAgUGCCccugUGUUGgcGCCc -3' miRNA: 3'- -GCAGU-GGUgACGGaa--GCAACuaCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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