Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10574 | 3' | -53.3 | NC_002687.1 | + | 305396 | 0.68 | 0.983217 |
Target: 5'- uGUCACCGCUGUCa--GgaGcgGCCGc -3' miRNA: 3'- gCAGUGGUGACGGaagCaaCuaCGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 307339 | 1.09 | 0.012639 |
Target: 5'- uCGUCACCACUGCCUUCGUUGAUGCCGu -3' miRNA: 3'- -GCAGUGGUGACGGAAGCAACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 307845 | 0.66 | 0.997789 |
Target: 5'- uCGUCAuCCAgUGCCccugUGUUGgcGCCc -3' miRNA: 3'- -GCAGU-GGUgACGGaa--GCAACuaCGGc -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 313008 | 0.73 | 0.876189 |
Target: 5'- gCGUgACCACUGCCgaaaaCGcaaUUGAUGCUGu -3' miRNA: 3'- -GCAgUGGUGACGGaa---GC---AACUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 322592 | 0.68 | 0.989312 |
Target: 5'- gCGUCACCaagGCUGaggCUUUGUagaagguUGAUGCCu -3' miRNA: 3'- -GCAGUGG---UGACg--GAAGCA-------ACUACGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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