Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10574 | 3' | -53.3 | NC_002687.1 | + | 99571 | 0.67 | 0.992792 |
Target: 5'- uCGUagCACC-CUGUCUUCGUUGGcgaGCUGc -3' miRNA: 3'- -GCA--GUGGuGACGGAAGCAACUa--CGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 44357 | 0.73 | 0.883031 |
Target: 5'- cCGUCugCGCcgGCCUcCGUcGAUGCUGu -3' miRNA: 3'- -GCAGugGUGa-CGGAaGCAaCUACGGC- -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 20110 | 0.66 | 0.995818 |
Target: 5'- cCGUCGCCAUacgcugUGCCUcgugcucUCGUUGuugGUCa -3' miRNA: 3'- -GCAGUGGUG------ACGGA-------AGCAACua-CGGc -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 10722 | 0.7 | 0.956061 |
Target: 5'- cCGUCGCCGCagccacuccGCCUUCGgaUGAcacUGCCa -3' miRNA: 3'- -GCAGUGGUGa--------CGGAAGCa-ACU---ACGGc -5' |
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10574 | 3' | -53.3 | NC_002687.1 | + | 5314 | 0.67 | 0.994275 |
Target: 5'- -uUCGCCAUUGCCUUguauagcgcuuuccUGUUGAcGUCGu -3' miRNA: 3'- gcAGUGGUGACGGAA--------------GCAACUaCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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