miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10574 5' -61.3 NC_002687.1 + 39430 0.66 0.881894
Target:  5'- uGUCGGCGCCaugcuucagcagCUCGCgGGcgacaugagcgUGGCCuucgcGGg -3'
miRNA:   3'- -CAGCCGCGG------------GAGCGgCU-----------ACCGGua---CC- -5'
10574 5' -61.3 NC_002687.1 + 296844 0.66 0.881894
Target:  5'- cUCGGCGcCCCUgGCCGAUcG-CGUGc -3'
miRNA:   3'- cAGCCGC-GGGAgCGGCUAcCgGUACc -5'
10574 5' -61.3 NC_002687.1 + 25444 0.66 0.881894
Target:  5'- -aCGGCGUacaCUcCGCgGAugUGGCCGUGu -3'
miRNA:   3'- caGCCGCGg--GA-GCGgCU--ACCGGUACc -5'
10574 5' -61.3 NC_002687.1 + 2877 0.66 0.868701
Target:  5'- -aUGGCGCCUUCGUCGGcacaGCCAUc- -3'
miRNA:   3'- caGCCGCGGGAGCGGCUac--CGGUAcc -5'
10574 5' -61.3 NC_002687.1 + 130850 0.66 0.868022
Target:  5'- cUUGGuCGgCCUCGCCGAguucauuUGGCUgacgGGg -3'
miRNA:   3'- cAGCC-GCgGGAGCGGCU-------ACCGGua--CC- -5'
10574 5' -61.3 NC_002687.1 + 84798 0.66 0.861836
Target:  5'- cUCGacGCGCaCCUCGgugguauugaCGGUGGUCGUGGu -3'
miRNA:   3'- cAGC--CGCG-GGAGCg---------GCUACCGGUACC- -5'
10574 5' -61.3 NC_002687.1 + 317846 0.66 0.859742
Target:  5'- cUUGGC-CUCUCGUgaaggugauguuguCGGUGGCCAUGu -3'
miRNA:   3'- cAGCCGcGGGAGCG--------------GCUACCGGUACc -5'
10574 5' -61.3 NC_002687.1 + 145774 0.66 0.854798
Target:  5'- -aCGGCcucCgCCUCGgCGAUGGCCGccucggacaUGGa -3'
miRNA:   3'- caGCCGc--G-GGAGCgGCUACCGGU---------ACC- -5'
10574 5' -61.3 NC_002687.1 + 3213 0.66 0.847592
Target:  5'- aUCGGCGCCCUCGa-GAccGCCGc-- -3'
miRNA:   3'- cAGCCGCGGGAGCggCUacCGGUacc -5'
10574 5' -61.3 NC_002687.1 + 224154 0.67 0.840223
Target:  5'- -cUGGCGCUggCGCuggCGGUGGCgGUGGc -3'
miRNA:   3'- caGCCGCGGgaGCG---GCUACCGgUACC- -5'
10574 5' -61.3 NC_002687.1 + 224124 0.67 0.832695
Target:  5'- -gUGGCGCUggCGCuggCGGUGGCgGUGGc -3'
miRNA:   3'- caGCCGCGGgaGCG---GCUACCGgUACC- -5'
10574 5' -61.3 NC_002687.1 + 165953 0.67 0.825016
Target:  5'- -aCGGCcCCCcUGCCGAUGGuCCAg-- -3'
miRNA:   3'- caGCCGcGGGaGCGGCUACC-GGUacc -5'
10574 5' -61.3 NC_002687.1 + 207395 0.67 0.825016
Target:  5'- cUCGGCGaCCCcccCGCCGAguauUGGUCAg-- -3'
miRNA:   3'- cAGCCGC-GGGa--GCGGCU----ACCGGUacc -5'
10574 5' -61.3 NC_002687.1 + 151315 0.67 0.825016
Target:  5'- -gUGGUGCcagCCUCGCCGAUGGaCGUc- -3'
miRNA:   3'- caGCCGCG---GGAGCGGCUACCgGUAcc -5'
10574 5' -61.3 NC_002687.1 + 209877 0.67 0.825016
Target:  5'- -gUGGUGCCCguggUGCCcguGGUGGCaGUGGu -3'
miRNA:   3'- caGCCGCGGGa---GCGG---CUACCGgUACC- -5'
10574 5' -61.3 NC_002687.1 + 101242 0.67 0.81719
Target:  5'- uUCGGCGCUCa---CGGUGGUCAUGa -3'
miRNA:   3'- cAGCCGCGGGagcgGCUACCGGUACc -5'
10574 5' -61.3 NC_002687.1 + 96335 0.67 0.81719
Target:  5'- uGUCGGUGUCCUCGUgGAUcGGuUCGaGGu -3'
miRNA:   3'- -CAGCCGCGGGAGCGgCUA-CC-GGUaCC- -5'
10574 5' -61.3 NC_002687.1 + 226944 0.67 0.81719
Target:  5'- cGUCGGCuCCgUCggcuGCCGGUGGUgGUGu -3'
miRNA:   3'- -CAGCCGcGGgAG----CGGCUACCGgUACc -5'
10574 5' -61.3 NC_002687.1 + 65569 0.67 0.81719
Target:  5'- -gCGGCacaugaugccguGCCgUCGCCGGUGuCCAUGa -3'
miRNA:   3'- caGCCG------------CGGgAGCGGCUACcGGUACc -5'
10574 5' -61.3 NC_002687.1 + 117695 0.68 0.792895
Target:  5'- -gUGGCGCCC---CCGAUGGuagcucCCAUGGg -3'
miRNA:   3'- caGCCGCGGGagcGGCUACC------GGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.