Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10574 | 5' | -61.3 | NC_002687.1 | + | 117695 | 0.68 | 0.792895 |
Target: 5'- -gUGGCGCCC---CCGAUGGuagcucCCAUGGg -3' miRNA: 3'- caGCCGCGGGagcGGCUACC------GGUACC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 209985 | 0.69 | 0.695912 |
Target: 5'- -aUGGUGCCCguggUGCCGGUGGUgCAgaUGGu -3' miRNA: 3'- caGCCGCGGGa---GCGGCUACCG-GU--ACC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 57138 | 0.72 | 0.520212 |
Target: 5'- aUCGGCGg---CGCUGAUGGCCAUGa -3' miRNA: 3'- cAGCCGCgggaGCGGCUACCGGUACc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 109051 | 0.74 | 0.434222 |
Target: 5'- aUCGGCGCUgaCGCCGAUGGCg---- -3' miRNA: 3'- cAGCCGCGGgaGCGGCUACCGguacc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 226800 | 0.77 | 0.290044 |
Target: 5'- -cCGGUGCCggUGCCGGUGGCgGUGGc -3' miRNA: 3'- caGCCGCGGgaGCGGCUACCGgUACC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 307376 | 0.97 | 0.016494 |
Target: 5'- uGUCGGCG-CCUCGCCGAUGGCCAUGGc -3' miRNA: 3'- -CAGCCGCgGGAGCGGCUACCGGUACC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 296844 | 0.66 | 0.881894 |
Target: 5'- cUCGGCGcCCCUgGCCGAUcG-CGUGc -3' miRNA: 3'- cAGCCGC-GGGAgCGGCUAcCgGUACc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 25444 | 0.66 | 0.881894 |
Target: 5'- -aCGGCGUacaCUcCGCgGAugUGGCCGUGu -3' miRNA: 3'- caGCCGCGg--GA-GCGgCU--ACCGGUACc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 224154 | 0.67 | 0.840223 |
Target: 5'- -cUGGCGCUggCGCuggCGGUGGCgGUGGc -3' miRNA: 3'- caGCCGCGGgaGCG---GCUACCGgUACC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 224124 | 0.67 | 0.832695 |
Target: 5'- -gUGGCGCUggCGCuggCGGUGGCgGUGGc -3' miRNA: 3'- caGCCGCGGgaGCG---GCUACCGgUACC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 209877 | 0.67 | 0.825016 |
Target: 5'- -gUGGUGCCCguggUGCCcguGGUGGCaGUGGu -3' miRNA: 3'- caGCCGCGGGa---GCGG---CUACCGgUACC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 96335 | 0.67 | 0.81719 |
Target: 5'- uGUCGGUGUCCUCGUgGAUcGGuUCGaGGu -3' miRNA: 3'- -CAGCCGCGGGAGCGgCUA-CC-GGUaCC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 145774 | 0.66 | 0.854798 |
Target: 5'- -aCGGCcucCgCCUCGgCGAUGGCCGccucggacaUGGa -3' miRNA: 3'- caGCCGc--G-GGAGCgGCUACCGGU---------ACC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 101242 | 0.67 | 0.81719 |
Target: 5'- uUCGGCGCUCa---CGGUGGUCAUGa -3' miRNA: 3'- cAGCCGCGGGagcgGCUACCGGUACc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 151315 | 0.67 | 0.825016 |
Target: 5'- -gUGGUGCcagCCUCGCCGAUGGaCGUc- -3' miRNA: 3'- caGCCGCG---GGAGCGGCUACCgGUAcc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 2877 | 0.66 | 0.868701 |
Target: 5'- -aUGGCGCCUUCGUCGGcacaGCCAUc- -3' miRNA: 3'- caGCCGCGGGAGCGGCUac--CGGUAcc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 226944 | 0.67 | 0.81719 |
Target: 5'- cGUCGGCuCCgUCggcuGCCGGUGGUgGUGu -3' miRNA: 3'- -CAGCCGcGGgAG----CGGCUACCGgUACc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 281818 | 0.68 | 0.776082 |
Target: 5'- --gGGCGCCagaagUGCCGAUGGCa--GGa -3' miRNA: 3'- cagCCGCGGga---GCGGCUACCGguaCC- -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 260169 | 0.73 | 0.467683 |
Target: 5'- uGUCGGCGCugCC-CGCCu-UGGCCAUGa -3' miRNA: 3'- -CAGCCGCG--GGaGCGGcuACCGGUACc -5' |
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10574 | 5' | -61.3 | NC_002687.1 | + | 249354 | 0.7 | 0.640136 |
Target: 5'- uUCGGCGCCCg-GCCuGGuugaugaaccUGGCgGUGGa -3' miRNA: 3'- cAGCCGCGGGagCGG-CU----------ACCGgUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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