miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10575 3' -56.3 NC_002687.1 + 296738 0.66 0.983711
Target:  5'- aCCgGAGUC-CUGCaaggCGCggUGCACGCc -3'
miRNA:   3'- -GGgUUCAGcGAUGga--GCG--ACGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 298045 0.66 0.983711
Target:  5'- gCCCAauugauaaGGcCGCgGCCgcCGCcGCGCGCGu -3'
miRNA:   3'- -GGGU--------UCaGCGaUGGa-GCGaCGUGCGC- -5'
10575 3' -56.3 NC_002687.1 + 62513 0.66 0.981879
Target:  5'- aCCCGAGUUcaGCUGCUUCaccucuauauuGgUGUGCGCa -3'
miRNA:   3'- -GGGUUCAG--CGAUGGAG-----------CgACGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 297685 0.66 0.981879
Target:  5'- gCCCAggaGGUUGUcACCcUGCUcGCGCGCc -3'
miRNA:   3'- -GGGU---UCAGCGaUGGaGCGA-CGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 181538 0.66 0.981879
Target:  5'- cUCCAgAGUggcaugggcUGCUGCCUUGaUGCGCGCc -3'
miRNA:   3'- -GGGU-UCA---------GCGAUGGAGCgACGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 223932 0.66 0.981879
Target:  5'- cCCCGGGaccgCGCUGCCcgaGCUGCcCGa- -3'
miRNA:   3'- -GGGUUCa---GCGAUGGag-CGACGuGCgc -5'
10575 3' -56.3 NC_002687.1 + 208739 0.66 0.977758
Target:  5'- uUCCAucgucGUCGCUGCUgcuuccaucgUCGCUGC-UGCu -3'
miRNA:   3'- -GGGUu----CAGCGAUGG----------AGCGACGuGCGc -5'
10575 3' -56.3 NC_002687.1 + 222939 0.66 0.976396
Target:  5'- aCCGAcccGUCGCUAUCUCgGCugaaaaucaagaccaUGUACGCu -3'
miRNA:   3'- gGGUU---CAGCGAUGGAG-CG---------------ACGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 197348 0.66 0.976396
Target:  5'- aCCGAcccGUCGCUAUCUCgGCugaaaaucaagaccaUGUACGCu -3'
miRNA:   3'- gGGUU---CAGCGAUGGAG-CG---------------ACGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 311212 0.66 0.972983
Target:  5'- cCCCGGaccauUCGCUGCCaaauuCUGCGCGCa -3'
miRNA:   3'- -GGGUUc----AGCGAUGGagc--GACGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 145683 0.67 0.967508
Target:  5'- gUCCGcGUCaGCcACCUCGgUGCcCGCGc -3'
miRNA:   3'- -GGGUuCAG-CGaUGGAGCgACGuGCGC- -5'
10575 3' -56.3 NC_002687.1 + 297005 0.67 0.967508
Target:  5'- uCCUcGGUgGCgaugUCUCGCUGUGCGCc -3'
miRNA:   3'- -GGGuUCAgCGau--GGAGCGACGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 275197 0.67 0.964494
Target:  5'- cUCCAGGUCugGUggauaUACCcCGCUGCACcuaGCGg -3'
miRNA:   3'- -GGGUUCAG--CG-----AUGGaGCGACGUG---CGC- -5'
10575 3' -56.3 NC_002687.1 + 247771 0.67 0.961289
Target:  5'- gCCAAGUU-UUACCgCGCgGCGCGCa -3'
miRNA:   3'- gGGUUCAGcGAUGGaGCGaCGUGCGc -5'
10575 3' -56.3 NC_002687.1 + 173650 0.67 0.961289
Target:  5'- gCCCg---CGCUAUCgagGCUGCugGCGu -3'
miRNA:   3'- -GGGuucaGCGAUGGag-CGACGugCGC- -5'
10575 3' -56.3 NC_002687.1 + 296055 0.67 0.961289
Target:  5'- gCCC----CGCUGCUcCGCUGCAcCGCGc -3'
miRNA:   3'- -GGGuucaGCGAUGGaGCGACGU-GCGC- -5'
10575 3' -56.3 NC_002687.1 + 207211 0.67 0.961289
Target:  5'- uUCAAGUCGCUACgugaacgacaUCGCggaACGCGg -3'
miRNA:   3'- gGGUUCAGCGAUGg---------AGCGacgUGCGC- -5'
10575 3' -56.3 NC_002687.1 + 47147 0.67 0.95789
Target:  5'- aCCGAagaucGUUGCUccuugccgacGCCUUGCuUGUACGCGu -3'
miRNA:   3'- gGGUU-----CAGCGA----------UGGAGCG-ACGUGCGC- -5'
10575 3' -56.3 NC_002687.1 + 281769 0.67 0.95789
Target:  5'- gCgCAAGcCGCU-CC-CGUUGCGCGUGu -3'
miRNA:   3'- -GgGUUCaGCGAuGGaGCGACGUGCGC- -5'
10575 3' -56.3 NC_002687.1 + 70579 0.67 0.956832
Target:  5'- uCCCGcgcaggucGUCGCggaaaaaagauuggUGCCagCGUUGCGCGCGg -3'
miRNA:   3'- -GGGUu-------CAGCG--------------AUGGa-GCGACGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.