Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10575 | 3' | -56.3 | NC_002687.1 | + | 63486 | 0.72 | 0.781254 |
Target: 5'- aCCCAgAGUCGCUaaACUUCuGCUcaaacaaggacGCACGCGu -3' miRNA: 3'- -GGGU-UCAGCGA--UGGAG-CGA-----------CGUGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 207211 | 0.67 | 0.961289 |
Target: 5'- uUCAAGUCGCUACgugaacgacaUCGCggaACGCGg -3' miRNA: 3'- gGGUUCAGCGAUGg---------AGCGacgUGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 241733 | 0.68 | 0.946486 |
Target: 5'- uCCCAgAGUCcacuuuacucuGCUGCCUgGCgGCAucCGCGa -3' miRNA: 3'- -GGGU-UCAG-----------CGAUGGAgCGaCGU--GCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 154067 | 0.68 | 0.93785 |
Target: 5'- cUCCAGGUUGCUGCCg-GCgUGCGuCGUc -3' miRNA: 3'- -GGGUUCAGCGAUGGagCG-ACGU-GCGc -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 20784 | 0.7 | 0.894853 |
Target: 5'- cCCCAacgacGGUCGCUaugccauacACCUUGCUGC-CGg- -3' miRNA: 3'- -GGGU-----UCAGCGA---------UGGAGCGACGuGCgc -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 307415 | 0.7 | 0.875317 |
Target: 5'- gUCCAAuccGUCGCUGCCcucaucaccaUCGCUGC-CGUc -3' miRNA: 3'- -GGGUU---CAGCGAUGG----------AGCGACGuGCGc -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 298045 | 0.66 | 0.983711 |
Target: 5'- gCCCAauugauaaGGcCGCgGCCgcCGCcGCGCGCGu -3' miRNA: 3'- -GGGU--------UCaGCGaUGGa-GCGaCGUGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 275197 | 0.67 | 0.964494 |
Target: 5'- cUCCAGGUCugGUggauaUACCcCGCUGCACcuaGCGg -3' miRNA: 3'- -GGGUUCAG--CG-----AUGGaGCGACGUG---CGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 281769 | 0.67 | 0.95789 |
Target: 5'- gCgCAAGcCGCU-CC-CGUUGCGCGUGu -3' miRNA: 3'- -GgGUUCaGCGAuGGaGCGACGUGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 134703 | 0.69 | 0.906283 |
Target: 5'- uCCCGAGaucgugcauagucUCGCgcguuUGCCgaucuuaacgCGCUGCACGUGa -3' miRNA: 3'- -GGGUUC-------------AGCG-----AUGGa---------GCGACGUGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 71677 | 0.72 | 0.789912 |
Target: 5'- aCCGAGUCGCUAagugCGCUGgACGaCGu -3' miRNA: 3'- gGGUUCAGCGAUgga-GCGACgUGC-GC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 297005 | 0.67 | 0.967508 |
Target: 5'- uCCUcGGUgGCgaugUCUCGCUGUGCGCc -3' miRNA: 3'- -GGGuUCAgCGau--GGAGCGACGUGCGc -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 133479 | 0.71 | 0.854044 |
Target: 5'- aCCGAGUUGCUGCUacCGC-GCACaGCGu -3' miRNA: 3'- gGGUUCAGCGAUGGa-GCGaCGUG-CGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 138498 | 0.68 | 0.954292 |
Target: 5'- uCCCAGGUCGUgaacAUCUUGCgaacgaACGCGu -3' miRNA: 3'- -GGGUUCAGCGa---UGGAGCGacg---UGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 181538 | 0.66 | 0.981879 |
Target: 5'- cUCCAgAGUggcaugggcUGCUGCCUUGaUGCGCGCc -3' miRNA: 3'- -GGGU-UCA---------GCGAUGGAGCgACGUGCGc -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 126467 | 0.71 | 0.86132 |
Target: 5'- gCCCAGGUUGCUGCUguaCUGguCGUGa -3' miRNA: 3'- -GGGUUCAGCGAUGGagcGACguGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 307986 | 1.1 | 0.005682 |
Target: 5'- cCCCAAGUCGCUACCUCGCUGCACGCGu -3' miRNA: 3'- -GGGUUCAGCGAUGGAGCGACGUGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 18375 | 0.68 | 0.954292 |
Target: 5'- aCCAcAGUCGUccuCCUCGCgcGCuACGCGc -3' miRNA: 3'- gGGU-UCAGCGau-GGAGCGa-CG-UGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 70579 | 0.67 | 0.956832 |
Target: 5'- uCCCGcgcaggucGUCGCggaaaaaagauuggUGCCagCGUUGCGCGCGg -3' miRNA: 3'- -GGGUu-------CAGCG--------------AUGGa-GCGACGUGCGC- -5' |
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10575 | 3' | -56.3 | NC_002687.1 | + | 47147 | 0.67 | 0.95789 |
Target: 5'- aCCGAagaucGUUGCUccuugccgacGCCUUGCuUGUACGCGu -3' miRNA: 3'- gGGUU-----CAGCGA----------UGGAGCG-ACGUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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