miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10575 5' -56.4 NC_002687.1 + 79197 0.66 0.982923
Target:  5'- gGCCGCgcugcgcaaauCCGUCAuuaacaacaacguggGCugcaaugaccaUGGUCGGGCAauaUCCa -3'
miRNA:   3'- -UGGCG-----------GGCAGU---------------UG-----------ACCAGCUCGU---AGG- -5'
10575 5' -56.4 NC_002687.1 + 77443 0.66 0.982183
Target:  5'- -aCGUCCGUCGAC-GG--GAGCGUCg -3'
miRNA:   3'- ugGCGGGCAGUUGaCCagCUCGUAGg -5'
10575 5' -56.4 NC_002687.1 + 275126 0.66 0.980227
Target:  5'- uCCGCUaaaaacgGUCAcguGCUGGUC-AGCAUCa -3'
miRNA:   3'- uGGCGGg------CAGU---UGACCAGcUCGUAGg -5'
10575 5' -56.4 NC_002687.1 + 42778 0.66 0.980227
Target:  5'- -gCGUcaaCCGUCGAcCUGGUCGGGUuaaguaucUCCg -3'
miRNA:   3'- ugGCG---GGCAGUU-GACCAGCUCGu-------AGG- -5'
10575 5' -56.4 NC_002687.1 + 113667 0.66 0.978115
Target:  5'- uCCG-CCGUCGGCUGcUCG-GCcuGUCCg -3'
miRNA:   3'- uGGCgGGCAGUUGACcAGCuCG--UAGG- -5'
10575 5' -56.4 NC_002687.1 + 297443 0.66 0.97584
Target:  5'- uUCGCCCGUCAugacagACUGGUaCGcccuGCccUCCu -3'
miRNA:   3'- uGGCGGGCAGU------UGACCA-GCu---CGu-AGG- -5'
10575 5' -56.4 NC_002687.1 + 254615 0.66 0.973398
Target:  5'- cACCGUCUG-CAGCaGGUUGAcaGCGcUCCg -3'
miRNA:   3'- -UGGCGGGCaGUUGaCCAGCU--CGU-AGG- -5'
10575 5' -56.4 NC_002687.1 + 200697 0.67 0.970782
Target:  5'- gGCUG-CCGcCAGCacGUCGAGCAcgUCCg -3'
miRNA:   3'- -UGGCgGGCaGUUGacCAGCUCGU--AGG- -5'
10575 5' -56.4 NC_002687.1 + 97650 0.67 0.97051
Target:  5'- gACCGCCC-------GGUCGAGCAgauaUCCa -3'
miRNA:   3'- -UGGCGGGcaguugaCCAGCUCGU----AGG- -5'
10575 5' -56.4 NC_002687.1 + 271395 0.67 0.969126
Target:  5'- aGCuCGCCCGUCgaugcaccugacucgGccacuauaacACUGGaCGAuGCAUCCg -3'
miRNA:   3'- -UG-GCGGGCAG---------------U----------UGACCaGCU-CGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 309544 0.67 0.967986
Target:  5'- -aCGCCCGUCAACgucauggaacGUCG-GCGgugCCg -3'
miRNA:   3'- ugGCGGGCAGUUGac--------CAGCuCGUa--GG- -5'
10575 5' -56.4 NC_002687.1 + 204564 0.67 0.966219
Target:  5'- cGCCGCCCG-CGugUGucaugccgaagcgguGUCGAccacaGCGUCUa -3'
miRNA:   3'- -UGGCGGGCaGUugAC---------------CAGCU-----CGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 85818 0.68 0.947176
Target:  5'- cCCGCUgGUCcGCUGGUCccGCugGUCCc -3'
miRNA:   3'- uGGCGGgCAGuUGACCAGcuCG--UAGG- -5'
10575 5' -56.4 NC_002687.1 + 139470 0.68 0.947176
Target:  5'- cGCCGUCCGUCAacacgaacGCUGGgauacCAUCCc -3'
miRNA:   3'- -UGGCGGGCAGU--------UGACCagcucGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 87097 0.68 0.943001
Target:  5'- uCCGUcucgCCGUCAGCgGGUCcGGCAUgCu -3'
miRNA:   3'- uGGCG----GGCAGUUGaCCAGcUCGUAgG- -5'
10575 5' -56.4 NC_002687.1 + 205379 0.68 0.938617
Target:  5'- gACCgGUCCGaUCGgaaGCUucGGUCGAGCA-CCa -3'
miRNA:   3'- -UGG-CGGGC-AGU---UGA--CCAGCUCGUaGG- -5'
10575 5' -56.4 NC_002687.1 + 234588 0.68 0.938617
Target:  5'- gGCCuGCUgGUCAcgcuuucuCUGGUCGAGCucgcguugcuUCCg -3'
miRNA:   3'- -UGG-CGGgCAGUu-------GACCAGCUCGu---------AGG- -5'
10575 5' -56.4 NC_002687.1 + 306343 0.68 0.938617
Target:  5'- -aCGaCCCGUCAACUucGUCGAGgCGUaCCu -3'
miRNA:   3'- ugGC-GGGCAGUUGAc-CAGCUC-GUA-GG- -5'
10575 5' -56.4 NC_002687.1 + 57479 0.68 0.938617
Target:  5'- cGCCGaugcagcauCCCGUUGACgGGUCuAGCGUCg -3'
miRNA:   3'- -UGGC---------GGGCAGUUGaCCAGcUCGUAGg -5'
10575 5' -56.4 NC_002687.1 + 279353 0.69 0.913525
Target:  5'- uGCCGUCCGguucCAcugccGCUGGUgGgAGCAUCg -3'
miRNA:   3'- -UGGCGGGCa---GU-----UGACCAgC-UCGUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.