miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10575 5' -56.4 NC_002687.1 + 11073 0.7 0.895942
Target:  5'- -aCGCCCGcCAuGCUGa--GAGCGUCCg -3'
miRNA:   3'- ugGCGGGCaGU-UGACcagCUCGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 292808 0.7 0.876525
Target:  5'- gGCCGCCuCGcCAACUGGaagCGguGGCggCCg -3'
miRNA:   3'- -UGGCGG-GCaGUUGACCa--GC--UCGuaGG- -5'
10575 5' -56.4 NC_002687.1 + 243486 0.71 0.855367
Target:  5'- uUCGCCCcu--AUUGGUCGAGCAUUUa -3'
miRNA:   3'- uGGCGGGcaguUGACCAGCUCGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 241173 0.71 0.847949
Target:  5'- uACCaCCacaCGUCGugUGGcCGAGCAUCUc -3'
miRNA:   3'- -UGGcGG---GCAGUugACCaGCUCGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 6035 0.71 0.843415
Target:  5'- -gCGCCuCGcUCGACUGGUCGAGgAcgaccggugugaucuUCCg -3'
miRNA:   3'- ugGCGG-GC-AGUUGACCAGCUCgU---------------AGG- -5'
10575 5' -56.4 NC_002687.1 + 38451 0.71 0.824677
Target:  5'- -gCGCCCGcucccaCAugUGGUUGAGCugcUCCa -3'
miRNA:   3'- ugGCGGGCa-----GUugACCAGCUCGu--AGG- -5'
10575 5' -56.4 NC_002687.1 + 211342 0.71 0.8166
Target:  5'- gGCUGCCCGgacUCGACUGGcgacuacgacgUCGuGCuUCCg -3'
miRNA:   3'- -UGGCGGGC---AGUUGACC-----------AGCuCGuAGG- -5'
10575 5' -56.4 NC_002687.1 + 58465 0.74 0.681705
Target:  5'- gGCCGCCC-UCGACucUGGUCGuuccCGUCCa -3'
miRNA:   3'- -UGGCGGGcAGUUG--ACCAGCuc--GUAGG- -5'
10575 5' -56.4 NC_002687.1 + 274712 0.81 0.360329
Target:  5'- cGCCGUCCGgacaugucucuugaaCAACUGGUCGGGUAUUCa -3'
miRNA:   3'- -UGGCGGGCa--------------GUUGACCAGCUCGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 308022 0.94 0.058996
Target:  5'- cACCGCCCGUCAACUGGUgcAGCAUCCc -3'
miRNA:   3'- -UGGCGGGCAGUUGACCAgcUCGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.