miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10575 5' -56.4 NC_002687.1 + 6035 0.71 0.843415
Target:  5'- -gCGCCuCGcUCGACUGGUCGAGgAcgaccggugugaucuUCCg -3'
miRNA:   3'- ugGCGG-GC-AGUUGACCAGCUCgU---------------AGG- -5'
10575 5' -56.4 NC_002687.1 + 11073 0.7 0.895942
Target:  5'- -aCGCCCGcCAuGCUGa--GAGCGUCCg -3'
miRNA:   3'- ugGCGGGCaGU-UGACcagCUCGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 38451 0.71 0.824677
Target:  5'- -gCGCCCGcucccaCAugUGGUUGAGCugcUCCa -3'
miRNA:   3'- ugGCGGGCa-----GUugACCAGCUCGu--AGG- -5'
10575 5' -56.4 NC_002687.1 + 42778 0.66 0.980227
Target:  5'- -gCGUcaaCCGUCGAcCUGGUCGGGUuaaguaucUCCg -3'
miRNA:   3'- ugGCG---GGCAGUU-GACCAGCUCGu-------AGG- -5'
10575 5' -56.4 NC_002687.1 + 57479 0.68 0.938617
Target:  5'- cGCCGaugcagcauCCCGUUGACgGGUCuAGCGUCg -3'
miRNA:   3'- -UGGC---------GGGCAGUUGaCCAGcUCGUAGg -5'
10575 5' -56.4 NC_002687.1 + 58465 0.74 0.681705
Target:  5'- gGCCGCCC-UCGACucUGGUCGuuccCGUCCa -3'
miRNA:   3'- -UGGCGGGcAGUUG--ACCAGCuc--GUAGG- -5'
10575 5' -56.4 NC_002687.1 + 77443 0.66 0.982183
Target:  5'- -aCGUCCGUCGAC-GG--GAGCGUCg -3'
miRNA:   3'- ugGCGGGCAGUUGaCCagCUCGUAGg -5'
10575 5' -56.4 NC_002687.1 + 79197 0.66 0.982923
Target:  5'- gGCCGCgcugcgcaaauCCGUCAuuaacaacaacguggGCugcaaugaccaUGGUCGGGCAauaUCCa -3'
miRNA:   3'- -UGGCG-----------GGCAGU---------------UG-----------ACCAGCUCGU---AGG- -5'
10575 5' -56.4 NC_002687.1 + 85818 0.68 0.947176
Target:  5'- cCCGCUgGUCcGCUGGUCccGCugGUCCc -3'
miRNA:   3'- uGGCGGgCAGuUGACCAGcuCG--UAGG- -5'
10575 5' -56.4 NC_002687.1 + 87097 0.68 0.943001
Target:  5'- uCCGUcucgCCGUCAGCgGGUCcGGCAUgCu -3'
miRNA:   3'- uGGCG----GGCAGUUGaCCAGcUCGUAgG- -5'
10575 5' -56.4 NC_002687.1 + 97650 0.67 0.97051
Target:  5'- gACCGCCC-------GGUCGAGCAgauaUCCa -3'
miRNA:   3'- -UGGCGGGcaguugaCCAGCUCGU----AGG- -5'
10575 5' -56.4 NC_002687.1 + 113667 0.66 0.978115
Target:  5'- uCCG-CCGUCGGCUGcUCG-GCcuGUCCg -3'
miRNA:   3'- uGGCgGGCAGUUGACcAGCuCG--UAGG- -5'
10575 5' -56.4 NC_002687.1 + 139470 0.68 0.947176
Target:  5'- cGCCGUCCGUCAacacgaacGCUGGgauacCAUCCc -3'
miRNA:   3'- -UGGCGGGCAGU--------UGACCagcucGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 200697 0.67 0.970782
Target:  5'- gGCUG-CCGcCAGCacGUCGAGCAcgUCCg -3'
miRNA:   3'- -UGGCgGGCaGUUGacCAGCUCGU--AGG- -5'
10575 5' -56.4 NC_002687.1 + 204564 0.67 0.966219
Target:  5'- cGCCGCCCG-CGugUGucaugccgaagcgguGUCGAccacaGCGUCUa -3'
miRNA:   3'- -UGGCGGGCaGUugAC---------------CAGCU-----CGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 205379 0.68 0.938617
Target:  5'- gACCgGUCCGaUCGgaaGCUucGGUCGAGCA-CCa -3'
miRNA:   3'- -UGG-CGGGC-AGU---UGA--CCAGCUCGUaGG- -5'
10575 5' -56.4 NC_002687.1 + 211342 0.71 0.8166
Target:  5'- gGCUGCCCGgacUCGACUGGcgacuacgacgUCGuGCuUCCg -3'
miRNA:   3'- -UGGCGGGC---AGUUGACC-----------AGCuCGuAGG- -5'
10575 5' -56.4 NC_002687.1 + 234588 0.68 0.938617
Target:  5'- gGCCuGCUgGUCAcgcuuucuCUGGUCGAGCucgcguugcuUCCg -3'
miRNA:   3'- -UGG-CGGgCAGUu-------GACCAGCUCGu---------AGG- -5'
10575 5' -56.4 NC_002687.1 + 241173 0.71 0.847949
Target:  5'- uACCaCCacaCGUCGugUGGcCGAGCAUCUc -3'
miRNA:   3'- -UGGcGG---GCAGUugACCaGCUCGUAGG- -5'
10575 5' -56.4 NC_002687.1 + 243486 0.71 0.855367
Target:  5'- uUCGCCCcu--AUUGGUCGAGCAUUUa -3'
miRNA:   3'- uGGCGGGcaguUGACCAGCUCGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.