miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 3' -54.6 NC_002687.1 + 280917 0.66 0.991067
Target:  5'- aGCCUcagcgauGCCGggGGCCCguguugaagcaGCGUCGGCg -3'
miRNA:   3'- gUGGA-------CGGCa-UCGGGaag--------UGCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 331955 0.66 0.989237
Target:  5'- aGCCUGCUGUGcacGCCUacUCGCGcUCAGg -3'
miRNA:   3'- gUGGACGGCAU---CGGGa-AGUGC-AGUUg -5'
10576 3' -54.6 NC_002687.1 + 172201 0.66 0.989237
Target:  5'- aCACCUggGCCagauccuggaGUGGCCgCUUCuGCGUCuGCg -3'
miRNA:   3'- -GUGGA--CGG----------CAUCGG-GAAG-UGCAGuUG- -5'
10576 3' -54.6 NC_002687.1 + 200920 0.66 0.989237
Target:  5'- gGCgugaUGCCGUcuuccGCCCga-GCGUCGACg -3'
miRNA:   3'- gUGg---ACGGCAu----CGGGaagUGCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 195105 0.66 0.987863
Target:  5'- aGCUUGuuGUAcCCCUUCuCGUuCAGCu -3'
miRNA:   3'- gUGGACggCAUcGGGAAGuGCA-GUUG- -5'
10576 3' -54.6 NC_002687.1 + 32879 0.66 0.986358
Target:  5'- -uUCUGCUGUAGCCgaagUCACcagcguuuuuGUCGACa -3'
miRNA:   3'- guGGACGGCAUCGGga--AGUG----------CAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 38619 0.67 0.984713
Target:  5'- aCACCaGCCG-AGCUaugUUUGCGUCGAUa -3'
miRNA:   3'- -GUGGaCGGCaUCGGg--AAGUGCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 257014 0.67 0.980975
Target:  5'- aCACCU-CCGauacacacUGGCCCgagCGCGUCGGg -3'
miRNA:   3'- -GUGGAcGGC--------AUCGGGaa-GUGCAGUUg -5'
10576 3' -54.6 NC_002687.1 + 159757 0.67 0.978868
Target:  5'- uCACCU-UCGUAGCUCUgucggCGuCGUCGGCu -3'
miRNA:   3'- -GUGGAcGGCAUCGGGAa----GU-GCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 155512 0.68 0.971512
Target:  5'- aCACC-GCCGUAGacaCCgcguCGUCGGCg -3'
miRNA:   3'- -GUGGaCGGCAUCg--GGaaguGCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 313386 0.68 0.962473
Target:  5'- aAgUUGCCGUGGCCggUCGCGUgAccGCg -3'
miRNA:   3'- gUgGACGGCAUCGGgaAGUGCAgU--UG- -5'
10576 3' -54.6 NC_002687.1 + 65451 0.69 0.951611
Target:  5'- aGCCUGCCacaacGUAGCUgacacuCUUCuuGUCAACu -3'
miRNA:   3'- gUGGACGG-----CAUCGG------GAAGugCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 202235 0.69 0.934117
Target:  5'- cCGCCUGCCcc-GCCCgagcgCGCGUgAGCc -3'
miRNA:   3'- -GUGGACGGcauCGGGaa---GUGCAgUUG- -5'
10576 3' -54.6 NC_002687.1 + 169795 0.7 0.929191
Target:  5'- cCACCgUGUCGUGGCCgacgccgACGUCGACa -3'
miRNA:   3'- -GUGG-ACGGCAUCGGgaag---UGCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 225217 0.71 0.867863
Target:  5'- gACCgUGCCGgcGCCgc-CGCGUCGGCg -3'
miRNA:   3'- gUGG-ACGGCauCGGgaaGUGCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 165176 0.73 0.778213
Target:  5'- aUAUCUgGUCGUugcacAGCgCCUUCGCGUCGACa -3'
miRNA:   3'- -GUGGA-CGGCA-----UCG-GGAAGUGCAGUUG- -5'
10576 3' -54.6 NC_002687.1 + 309505 1.09 0.008172
Target:  5'- gCACCUGCCGUAGCCCUUCACGUCAACu -3'
miRNA:   3'- -GUGGACGGCAUCGGGAAGUGCAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.