miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 5' -52.4 NC_002687.1 + 171073 0.66 0.999652
Target:  5'- cCCGgagaggaCGGCGUaGUGGAGCGgguaGGCGu -3'
miRNA:   3'- -GGCa------GUUGCAgUACCUUGCag--CCGCc -5'
10576 5' -52.4 NC_002687.1 + 84681 0.66 0.999652
Target:  5'- -aGUgAuCGUCAUGGccguCGUCGGUGu -3'
miRNA:   3'- ggCAgUuGCAGUACCuu--GCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 169676 0.66 0.999572
Target:  5'- gCCGUUcuUGUgGUGGAcgAUGUCGGaaaaGGu -3'
miRNA:   3'- -GGCAGuuGCAgUACCU--UGCAGCCg---CC- -5'
10576 5' -52.4 NC_002687.1 + 258254 0.66 0.999572
Target:  5'- aCCGUgGagauucGCGUCAcGGAcagcgGCGUCGGUc- -3'
miRNA:   3'- -GGCAgU------UGCAGUaCCU-----UGCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 248101 0.66 0.999572
Target:  5'- gCCGagCAACGaCuggGGGGCGUuugacuUGGCGGg -3'
miRNA:   3'- -GGCa-GUUGCaGua-CCUUGCA------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 237448 0.66 0.999572
Target:  5'- gCGUCGACacccUCAgauguaucaagGcGGACGUCGGCGa -3'
miRNA:   3'- gGCAGUUGc---AGUa----------C-CUUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 22157 0.66 0.999572
Target:  5'- cCCGgCGACGcCAUgcccuguccuugGGAGCGUucaccaggaggUGGCGGa -3'
miRNA:   3'- -GGCaGUUGCaGUA------------CCUUGCA-----------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 46910 0.66 0.999476
Target:  5'- gCGUUGAUGUCuUGGGugcAUGUCGGaGGc -3'
miRNA:   3'- gGCAGUUGCAGuACCU---UGCAGCCgCC- -5'
10576 5' -52.4 NC_002687.1 + 225216 0.66 0.999362
Target:  5'- aCCGUgcCGGCGcCGcc--GCGUCGGCGGc -3'
miRNA:   3'- -GGCA--GUUGCaGUaccuUGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 297347 0.66 0.999362
Target:  5'- aCCGagGACGcgcgCgAUGG--UGUCGGCGGa -3'
miRNA:   3'- -GGCagUUGCa---G-UACCuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 133789 0.66 0.999362
Target:  5'- ---aCGAgGUUGUGGcaAGCGUgGGCGGg -3'
miRNA:   3'- ggcaGUUgCAGUACC--UUGCAgCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 74048 0.66 0.999362
Target:  5'- gCCGUCGACcuauGUCucUGcGAGCGcUUGGCGu -3'
miRNA:   3'- -GGCAGUUG----CAGu-AC-CUUGC-AGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 123705 0.66 0.99907
Target:  5'- cCCG-CAugGUCA----ACGUCGGCaGGu -3'
miRNA:   3'- -GGCaGUugCAGUaccuUGCAGCCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 251498 0.67 0.998884
Target:  5'- aCCGUCAAcCGUCGgcuGACGUCcaGGCuGGu -3'
miRNA:   3'- -GGCAGUU-GCAGUaccUUGCAG--CCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 270682 0.67 0.998884
Target:  5'- -gGUUGGCGUCuGUGGAGCGcgCGcGCGu -3'
miRNA:   3'- ggCAGUUGCAG-UACCUUGCa-GC-CGCc -5'
10576 5' -52.4 NC_002687.1 + 163996 0.67 0.998669
Target:  5'- uUCGUCggUGUCGaGGucguCGUCGGUa- -3'
miRNA:   3'- -GGCAGuuGCAGUaCCuu--GCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 157657 0.67 0.998645
Target:  5'- gCUGUUAGCGUUgaGUGcGAAuucauuuCGUCGGCGc -3'
miRNA:   3'- -GGCAGUUGCAG--UAC-CUU-------GCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 249566 0.67 0.998419
Target:  5'- gCCGuguagaUCGAUGagGUccGGGGCGUCGGaCGGa -3'
miRNA:   3'- -GGC------AGUUGCagUA--CCUUGCAGCC-GCC- -5'
10576 5' -52.4 NC_002687.1 + 290514 0.67 0.997763
Target:  5'- cCCGaaAACGUCAUGGAGgauCGUCGcaguucgacggaaGUGGc -3'
miRNA:   3'- -GGCagUUGCAGUACCUU---GCAGC-------------CGCC- -5'
10576 5' -52.4 NC_002687.1 + 96120 0.68 0.997419
Target:  5'- uUGUCGAcgauCGUCGUGGuguuUGUUGGCGu -3'
miRNA:   3'- gGCAGUU----GCAGUACCuu--GCAGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.