Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10576 | 5' | -52.4 | NC_002687.1 | + | 309547 | 1.13 | 0.011837 |
Target: 5'- cCCGUCAACGUCAUGGAACGUCGGCGGu -3' miRNA: 3'- -GGCAGUUGCAGUACCUUGCAGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 71678 | 0.76 | 0.83827 |
Target: 5'- gCCGggGGCGUCG-GGAAgGUCGGCGa -3' miRNA: 3'- -GGCagUUGCAGUaCCUUgCAGCCGCc -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 75326 | 0.75 | 0.900653 |
Target: 5'- aCUGUCGACGUgGuauacUGGAAagaUCGGCGGg -3' miRNA: 3'- -GGCAGUUGCAgU-----ACCUUgc-AGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 114987 | 0.75 | 0.888156 |
Target: 5'- cCCGUCGA--UCAcgGGGACGUCGGCu- -3' miRNA: 3'- -GGCAGUUgcAGUa-CCUUGCAGCCGcc -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 215393 | 0.74 | 0.90659 |
Target: 5'- gCGUgGACGUC-UGGAAacaGUgCGGCGGc -3' miRNA: 3'- gGCAgUUGCAGuACCUUg--CA-GCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 86930 | 0.74 | 0.90659 |
Target: 5'- aCCG-CGAguuuCGUC-UGGAGCGccUCGGCGGg -3' miRNA: 3'- -GGCaGUU----GCAGuACCUUGC--AGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 24078 | 0.73 | 0.946431 |
Target: 5'- gCGcCAGCGaugcCGgaGGGGCGUCGGCGGu -3' miRNA: 3'- gGCaGUUGCa---GUa-CCUUGCAGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 123081 | 0.73 | 0.950456 |
Target: 5'- aCGUCGACGUCAcGGA-CGggaGGgGGg -3' miRNA: 3'- gGCAGUUGCAGUaCCUuGCag-CCgCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 57119 | 0.73 | 0.950456 |
Target: 5'- cCCGUCAACGggAUGcuGCaUCGGCGGc -3' miRNA: 3'- -GGCAGUUGCagUACcuUGcAGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 182913 | 0.72 | 0.967543 |
Target: 5'- uCCGgCAugGcCGUGGGACGgUGGCGa -3' miRNA: 3'- -GGCaGUugCaGUACCUUGCaGCCGCc -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 40416 | 0.72 | 0.961301 |
Target: 5'- cCCGgCGACGcCAUGuccUGUCGGCGGg -3' miRNA: 3'- -GGCaGUUGCaGUACcuuGCAGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 280918 | 0.71 | 0.974048 |
Target: 5'- gCC-UCAGCGaugCcgGGGgcccguguugaagcaGCGUCGGCGGg -3' miRNA: 3'- -GGcAGUUGCa--GuaCCU---------------UGCAGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 328273 | 0.71 | 0.977822 |
Target: 5'- aCGguggcaggCAGCGUUgGUGGAcaACGUCGGCGa -3' miRNA: 3'- gGCa-------GUUGCAG-UACCU--UGCAGCCGCc -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 84722 | 0.71 | 0.973035 |
Target: 5'- uCCGUCAcCGUCGUcGcGACGUugacgguugCGGCGGa -3' miRNA: 3'- -GGCAGUuGCAGUA-CcUUGCA---------GCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 95020 | 0.7 | 0.981951 |
Target: 5'- --cUCAAaGUCAUGGGcucaAUGUUGGCGGa -3' miRNA: 3'- ggcAGUUgCAGUACCU----UGCAGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 84359 | 0.7 | 0.981951 |
Target: 5'- aCCGUCAACGUCGc--GACGaCGGUGa -3' miRNA: 3'- -GGCAGUUGCAGUaccUUGCaGCCGCc -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 226951 | 0.7 | 0.989742 |
Target: 5'- uCCGUCGGCugccgGUgGUGG--UGUCGGUGGc -3' miRNA: 3'- -GGCAGUUG-----CAgUACCuuGCAGCCGCC- -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 126319 | 0.7 | 0.985474 |
Target: 5'- uCCGUUuuCGUCuucGGACGUUGGCGu -3' miRNA: 3'- -GGCAGuuGCAGuacCUUGCAGCCGCc -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 170162 | 0.69 | 0.992961 |
Target: 5'- gUGUCGACGUCG----GCGUCGGCc- -3' miRNA: 3'- gGCAGUUGCAGUaccuUGCAGCCGcc -5' |
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10576 | 5' | -52.4 | NC_002687.1 | + | 155024 | 0.69 | 0.992961 |
Target: 5'- aCGaUCGugGUCgAUGGAucuACGgUGGCGGu -3' miRNA: 3'- gGC-AGUugCAG-UACCU---UGCaGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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